Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0971 ATGGCAGATCTTGTTAGCCACGTGAATGCTGACCGTGACATAGAGCAGGCATTGATTGCTTTGAAAAGGGGTGCTCAACTGCTTAAGTATGGTCGTAAGGGAAAGCCCAAGTTTTGCCCATTTAAACTTTCCAGTGATGAGTCATCTTTAATCTGGATTTCAAGTAGTGGAGAAAGAAGTCTGAAGCTATCTTCTGTCTCAAGAATTATTCCTGGACAAAGAACAGCTGTTTTCAAACGCTATCTGCGTCCCGAGAAGGACTATTTGTCTTTTTCACTTATTTATAATAACGGAAAGCAATCCCTTGATTTGATTTGCAAAGATAAAGCTGAGGCAGAAGCGTGGACTGCCGGACTCAAAGCACTGATTTCTTCTGGTCAAGGTGGTAGGTCCAAAATTGATGGATGGGGTGATGGAGCCCTCAATCTTGATGACAGCAGAGACTTGAGTCCAAGCGAAAGTTCAGCCAGGGCGTCACGAGATGCCAGTTCTCCTGACATTTCTGTGAGTCTTCCAAATACTTCACCAAATTCCTTTAAGCCTGACACCACCGTAAATTTAGAAAGGTCACATGCATCTTCAGACACAACAAACATGCAAGTAAAAGGATCTGGTTCAGATGCTCTTCGTGTCAGTGTTTCAAGTGTCCCAAGCACATCGAGTCATGGATCTGCGCCAGATGATTATGATGCCCTGGGGGTTGTATACATATGGGGGGAGGTTATCTGTGAAAATGTTGTAAAAGTTGGTGCTAATAAAAGTGTCAATTTTTCCAGCCCGAGGGCAGATGTTCTTCTCCCCAGACAATTGGAATCTGATGTAGTTTTAGATGTATATCATATAGCATGTGGTGTTAGACATGCCTCTCTACTGACTAGACAAGGTGAAGTTTTTACATGGGGTGAAGAATCGGGAGGGCGCCTTGGCCATGGTTTTAGGAAGAATGTGGTTCAACCTCGTCTAGTTGAGGCATTGGCTTCTACAGCTGTTGATTTTGTTGCATGTGGGGAGTTCCATTCCTGTGCTGTTACGACGGCTGGGGATCTATATACATGGGGTGATGGTACTCATAATGCTGGGCTTCTTGGTCATGGCACTGATATTAGTCATTGGATACCGAAGAGAATTGCAGGTCCTCTAGAGGGACTTCAAGTTGCTTTTGTCAGTTGTGGTCCTTGGCACACAGCCATGATAAGTTCTAATGGGCAACTCTTTACATTTGGTGATGGAACATTTGGTGCCTTAGGCCATGGAGATAGGGAAAATGTTTCATATCCTAGAGAAGTAGAATCCTTATTAGGATTAAGGACAATAGCTGCTGCATGTGGAGTGTGGCATACTGCGGCTGTTGTAGAGATTATTGTGACACAATCTAGTGCGAGTGTATCATCAGGTAAATTGTTTACTTGGGGTGATGGAGACAAAGGCCGCCTCGGACACGGGGACAAGGAGGCACGGCTTAAACCAACTTGCGTGTCTGCGCTTATTGATTACAATTTTCATAAAGTTGCTAGTGGGCACAGTTTGACAGTTAGCCTGACAACATCTGGACGTGTTTTCACAATGGGAAGTACTGTTTATGGTCAGCTTGGGAATCCTCGCTCTGATGGCAAGCTTCCCTGCTTGGTTGAAGATAAAATTTCTGGGGAATACATTGAAGAAATTGCATGTGGTGCATATCATGTTGGAATTTTAACATCCAGAAATGAAGTTTATACATGGGGGAAGGGTGCGAATGGAAGATTGGGTCATGGAGATGTTGAAGATCGAAAAACACCAACTTTGGTTGAAGCATTGAAGGATAAACATGTGAAATGTATTGCATGTGTTTCGAACTACTCTGCTGCCGTATGCCTTCATAAATGGGCATCGGGTGCTGAGCAGTCTCAGTGCTCTGCTTGTAAACAGGCATTTGGATTCACTAGAAAGAAGCACAATTGTTATAATTGTGGACTTGCGCATTGCCATCCATGTAGTTCAAGAAAAGCACTAAGAGCCGCCTTGGCTCCTAATCCTGGGAAGCCATATCGTGTTTGTGATTCTTGTTATGCAAAATTGAACAAGGTTGCTGAAGCTAGCAATAACAATCGGAGGAATGCTTTGCCTCGTCTTTCTGGTGAAAACAAGGACAGGTTAGACAAGTCCGAGGTAAGATTGACAAAGTCATTGGTTCCTTCTAATATGGATTTGATAAAGCAACTAGATATTAAGGCAGCCAAACAAGGAAAGAAAGCTGATACATTCTCACTGGTTCGCAACTCACAAGCACCTTCTTTGCTACAGCTGAAAGATCTTGTCTTGTCTACTGCTATCGATATGAAACGAACAGTTCCAAGACCAGTGGTTGCACCATCTGCAATAAGTTCCAGGTCTGTGTCTCCTTTCTCTAGGAGATCAAGCCCCCCTCGTTCTGCTACGCCATTTCCAACAACATCGGGACTTTCTTTCTCCAAAAGTATTGCTGATAATTTGATAAAGACAAATGAACTTTTAAATCAAGAAGTGCAGACGTTACGCACAGAGGTCGAGAGACTGAAACAGAGATGTGAACAACAAGAATTAGAGCTTCGAAGGTCAGCAAAAAAGACTCAAGAAGCTATGGCACTGGCTGCTGATGAATCTGCCAAATGTAATGCTGCAAAAGAAGTTATAAAGCCACTTACATCACAGATCAAAGATCTGGCTGAGAAGCTTCCTCCTGGTGTCTATGATGCTGAGAACATAAGACCTACTTACCTAACAAATGGTTTTGAGTCAAATGGCATCCACTATCCAGACTCAAACGGAGACCGCCACTCCAGGGCTGAGTCAACTAGTAGCTCTAGTTCCGCCTCCATAGGACTTGAATCCACTCTGTTGAATAGAACTGAGGGGAATTTGCCAGGAACCTGTGGAACGAATTGGGGCCTTGATAATCAATCAGACAATTATCCAGATGTTAAATTGCCAAATGTTGCCGGTGTGATTCAGTCAAGCAGCAGTAGCATGTCAGATACCGTTGATGGTAGGGATTCCGGGCATTTCCGTGATAATGACAGCGGTCTGAGATCGGCAAATGCTGCACAGGCTGATAATAGTGATCAAGTTGAAGCGGAATGGATTGAACAGTATGAACTAGGTGTTTATATAACACTTGTGGCCCTGCATGATGGAACAAGAGATCTGAAGCGAGTACGCTTTAGCCGAAGAAGATTTGGAGAGCACCAAGCAGAGTCTTGGTGGTCAGAGAACCGGGAGAAGGTATACGAAAAGTACAATGTTCGTAGCGCAGACAAGTCTTCTGGCCGGCTAAGCGATACATAG 3303 0.4393 MADLVSHVNADRDIEQALIALKRGAQLLKYGRKGKPKFCPFKLSSDESSLIWISSSGERSLKLSSVSRIIPGQRTAVFKRYLRPEKDYLSFSLIYNNGKQSLDLICKDKAEAEAWTAGLKALISSGQGGRSKIDGWGDGALNLDDSRDLSPSESSARASRDASSPDISVSLPNTSPNSFKPDTTVNLERSHASSDTTNMQVKGSGSDALRVSVSSVPSTSSHGSAPDDYDALGVVYIWGEVICENVVKVGANKSVNFSSPRADVLLPRQLESDVVLDVYHIACGVRHASLLTRQGEVFTWGEESGGRLGHGFRKNVVQPRLVEALASTAVDFVACGEFHSCAVTTAGDLYTWGDGTHNAGLLGHGTDISHWIPKRIAGPLEGLQVAFVSCGPWHTAMISSNGQLFTFGDGTFGALGHGDRENVSYPREVESLLGLRTIAAACGVWHTAAVVEIIVTQSSASVSSGKLFTWGDGDKGRLGHGDKEARLKPTCVSALIDYNFHKVASGHSLTVSLTTSGRVFTMGSTVYGQLGNPRSDGKLPCLVEDKISGEYIEEIACGAYHVGILTSRNEVYTWGKGANGRLGHGDVEDRKTPTLVEALKDKHVKCIACVSNYSAAVCLHKWASGAEQSQCSACKQAFGFTRKKHNCYNCGLAHCHPCSSRKALRAALAPNPGKPYRVCDSCYAKLNKVAEASNNNRRNALPRLSGENKDRLDKSEVRLTKSLVPSNMDLIKQLDIKAAKQGKKADTFSLVRNSQAPSLLQLKDLVLSTAIDMKRTVPRPVVAPSAISSRSVSPFSRRSSPPRSATPFPTTSGLSFSKSIADNLIKTNELLNQEVQTLRTEVERLKQRCEQQELELRRSAKKTQEAMALAADESAKCNAAKEVIKPLTSQIKDLAEKLPPGVYDAENIRPTYLTNGFESNGIHYPDSNGDRHSRAESTSSSSSASIGLESTLLNRTEGNLPGTCGTNWGLDNQSDNYPDVKLPNVAGVIQSSSSSMSDTVDGRDSGHFRDNDSGLRSANAAQADNSDQVEAEWIEQYELGVYITLVALHDGTRDLKRVRFSRRRFGEHQAESWWSENREKVYEKYNVRSADKSSGRLSDT 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0971 1100 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 295 346 IPR000408 -
Lal2g0971 1100 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 625 687 IPR017455 -
Lal2g0971 1100 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 347 401 IPR000408 -
Lal2g0971 1100 Pfam Transcription factor BRX N-terminal domain 872 907 IPR027988 -
Lal2g0971 1100 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 569 620 IPR000408 -
Lal2g0971 1100 SUPERFAMILY PH domain-like 13 123 - -
Lal2g0971 1100 MobiDBLite consensus disorder prediction 919 946 - -
Lal2g0971 1100 Pfam Transcription factor regulating root and shoot growth via Pin3 1030 1085 IPR013591 -
Lal2g0971 1100 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 517 568 IPR000408 -
Lal2g0971 1100 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 465 516 IPR000408 -
Lal2g0971 1100 Gene3D - 13 129 IPR011993 -
Lal2g0971 1100 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 402 453 IPR000408 -
Lal2g0971 1100 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 13 1088 - -
Lal2g0971 1100 MobiDBLite consensus disorder prediction 989 1024 - -
Lal2g0971 1100 MobiDBLite consensus disorder prediction 782 812 - -
Lal2g0971 1100 MobiDBLite consensus disorder prediction 144 225 - -
Lal2g0971 1100 MobiDBLite consensus disorder prediction 786 812 - -
Lal2g0971 1100 Pfam FYVE zinc finger 621 687 IPR000306 GO:0046872
Lal2g0971 1100 CDD PH_PLC_plant-like 12 124 - -
Lal2g0971 1100 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 388 398 IPR000408 -
Lal2g0971 1100 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 622 698 IPR013083 -
Lal2g0971 1100 SUPERFAMILY FYVE/PHD zinc finger 621 695 IPR011011 -
Lal2g0971 1100 PRINTS Chromosome condensation regulator RCC1 signature 297 313 IPR000408 -
Lal2g0971 1100 PRINTS Chromosome condensation regulator RCC1 signature 347 363 IPR000408 -
Lal2g0971 1100 PRINTS Chromosome condensation regulator RCC1 signature 388 404 IPR000408 -
Lal2g0971 1100 PRINTS Chromosome condensation regulator RCC1 signature 404 418 IPR000408 -
Lal2g0971 1100 PRINTS Chromosome condensation regulator RCC1 signature 506 524 IPR000408 -
Lal2g0971 1100 PRINTS Chromosome condensation regulator RCC1 signature 564 585 IPR000408 -
Lal2g0971 1100 SUPERFAMILY RCC1/BLIP-II 234 621 IPR009091 -
Lal2g0971 1100 Pfam Regulator of chromosome condensation (RCC1) repeat 401 450 IPR000408 -
Lal2g0971 1100 Pfam Regulator of chromosome condensation (RCC1) repeat 295 343 IPR000408 -
Lal2g0971 1100 Pfam Regulator of chromosome condensation (RCC1) repeat 570 617 IPR000408 -
Lal2g0971 1100 Pfam Regulator of chromosome condensation (RCC1) repeat 347 398 IPR000408 -
Lal2g0971 1100 Pfam Regulator of chromosome condensation (RCC1) repeat 516 563 IPR000408 -
Lal2g0971 1100 Pfam Regulator of chromosome condensation (RCC1) repeat 464 512 IPR000408 -
Lal2g0971 1100 ProSiteProfiles BRX domain profile. 1031 1086 IPR013591 -
Lal2g0971 1100 Gene3D - 456 621 IPR009091 -
Lal2g0971 1100 SMART fyve_4 617 688 IPR000306 GO:0046872
Lal2g0971 1100 Coils Coil 821 862 - -
Lal2g0971 1100 MobiDBLite consensus disorder prediction 147 225 - -
Lal2g0971 1100 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1088 - -
Lal2g0971 1100 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Lal2g0971 1100 Gene3D - 175 357 IPR009091 -
Lal2g0971 1100 Gene3D - 358 455 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0971 Lal-Chr2 6535731 6543326 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0971 881 1094 Major Intrinsic Protein MIP AT1G31880 30.455 1.46e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0971 - - adu:107490830 1740.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0971 2 6535731 6543326 Lal12g0080 12 520981 528691 PCT
Lal2g0971 2 6535731 6543326 Lal13g0067 13 405904 418537 PCT
Lal2g0971 2 6535731 6543326 Lal24g0068 24 416580 423368 PCT
Lal12g0080 12 520981 528691 Lal2g0971 2 6535731 6543326 PCT
Lal13g0067 13 405904 418537 Lal2g0971 2 6535731 6543326 PCT
Lal24g0068 24 416580 423368 Lal2g0971 2 6535731 6543326 PCT