Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0970 ATGGTAATGAAATATTTTTGGAGCATGATTTGTGAAGATTCTGGTTGTTCTGATACTGAGGGAAAGCCTTTCTGTTATGATTTCAAGTATTTGAAAGATCCTTCTACATGTATCAACCATTTGTTCATCATTTCCATTGATGTGTTGCTTCTGATCATGCTATTATTCATTAAGATCCAGAAATCATTATCAACACCATTTCAGGGCTTAGTCCAGGGCCAGGTGCATAGATATTCAAATTTGCAACTAGTTTCAGCCATTATCAATGGATCCCTTGGATTAGTGCATTTGTGTTTTGGCATATGGGTTTTAGAGGAGAAGCTGAGAAGAACACACACTACTTTGTCTCATGATTTGTGGTTGCTAGAACTATTTCAAGGATGCACATGGTTGTTGATAGGTTTAACAGTAAGTCTTCAAATGAAACAACTTCCAAGGACATGGTTGCGGCTGTTTTTGGTTTTTGTTTTCTTGGTTTCTGGTTTTTTCTGTATTCTGTCCTTGTTTTACGCAGTTAGCGGCGGAGAACTATCCCTTAAGATAGTGTTAGATGTTCTATCTTTTCCAGGAGCAATTTTATTGCTTGTATGTGTATATAAGTGTGAAGACACTGATGGAGAAATTGATGAAAGCCTTTATGCCCCTCTCAGTGGGAAGTTTGATTCTATTAGCTATGTAACTCCACTTGCCAAAGCTGGAATCTTCAATAGGATGTCATTTTGGTGGTTGAATCCATTGATGAAAAGGGGTCAAGAGAAAACACTTCAGGATGAGGATATCCCGATGTTGCGCGAATCAGATCGAGCAGAAAGTTGCTATTTGTTGTTTGTAGATCAACTGACAAAACAGAAACAAAAAGAGTCACAATCGCAGACATCACTTTTTTGGACAATAATCTTGTGCCACTGGAGAGAGATTTTGATATCAGGAGTTTTTGCACTGCTAAAGGTACTAACTTTGTCTTGTGGTCCTCTACTTCTTAATGCCTTTATATTGGTTGCTGAGGGTAATGAAAGTTTCAAATATGAAGGTTATGCATTGGCCATATCACTTTTCTTTATAAAGATCATAGAATCCATATCACAAAGGCAGTGGTATTTCCGCACGAGACTAATCGGTATGAAAGTAAGGTCACTTATTACTGCAGCCATTTATAAGAAACAATTGAGGTTATCCAATGCTGCTAGACTGACTCACTCAGGTGGTGAGATAATGAATTATGTGACTGTTGATGCTTTTAGGATTGGAGAGTTTCCATTTTGGATTCACCAGACATGGACAACAATAGTCCAACTATGTATGGCATTAGTAATTCTTTTCAATGCTGTTGGGTTGGCAACAATTGCCTCATTGGTAGTGATAGTTCTCACTGTACTTTGCAATACTCCACTAGCAAAGTTACAGCATAAGTTTCAAAGCAAACTTATGGCGGCACAAGATGAGAGATTGAAGGCTAGTTCTGAGGCTCTCTTGAATATGAAAGTACTGAAGTTGTATGCATGGGAAACCCATGTTAAAAATGCAATAGAAAGCATAAGAAATGTGGAACTTGAATGGTTATCGGCATTCCAACTAAAGAGGGCATATGGTGTATTTCTCTTTTGGACATCACCTGTCTTGGTATCTGCTGCTTCCTTTTGTGCATGTTACTTTCTGAATGTTCCTTTACATGCAAATAATGTTTTCACTTTTGTGGCAACTTTACGCCTTGTGCAAGAACCAATTACAAACATCCCGGATGTTATCGGGGTTATCATTCAAGCAAAAGTTGCATTTGCCCGGATTGTTAAATTCCTCGAGGCACCTGAACTAGAGAATGAAAATTTCCGGAACAGGCGTTTTAATGAGAATCTTAGAGGCTCAATTTTGTTCAACTCAGCTGACTTTTCATGGGAAGATAATGTATCAAAGTCCACACTAAGAAACATAAATTTGGAGGTTAGACATGGGCAGAAGGTGGCTATTTGTGGAGAAGTTGGCGCAGGCAAATCAACCCTCTTAGCAGCAATTCTCGGAGAAGTTCCAAATACAAAGGGAACTATTGAAGTTTATGGGAAGTTTGCATATGTTTCTCAGACAGCATGGATACAGACAGGTACAATACAGGAAAACATTTTGTTTGGGTCAGCTTTAGATGTTCAAAGATATCAAGAAACACTTCACAGGTCTTCACTGATGAAGGACCTTGAGTTGTTTCCACATGGTGACCTCACCGAAATAGGAGAAAGAGGAGTTAACCTGAGTGGAGGTCAGAAGCAGCGAATTCAACTTGCGCGTGCTCTTTATCAGAATGCCGATGTATATCTCTTGGATGATCCCTTCAGTGCTGTTGATGCACATACTGCCAAAAGTTTGTTTAATGAATATGTCATGGAAGGACTTACAGGGAAGACTATCTTACTTGTTACTCATCAAGTTGAATTTCTCCCAGTCTTTGACTCTGTTCTGTTGATGTCAGATGGCGAAATCGTACAAGCTGCTCCTTATGATCATCTATTAACAACAAGCCAAAAATTCCAGGATCTTGTCAATGCTCACAAGGAGACTGTTGGTTCTAACCAGCTTCATGATCTTACTTCTGCCCAAAGGTATTCAACTTCTGCTAGAGAGATTAAGCAAGTATACATGGTGAAGCCGATTACAGCATCGAATGGAAATCAATTAATTAAGCAAGAAGAAAGAGAGATAGGAGATGCAGGGTTAAAGCCTTACTTAAAGTATCTGAATCAGATCAAAGGTTACATATACTTGTTTGTGGCTGCCTTGTGTCACCTTACATTTGTGACTTGCCAGATACTGCAGAACTCATGGATGGGTGCTAATGTCGACAACCCTCATGTCAGCACATTGCGATTGATTGTCGTTTACGTGTTGATTGGCGTTATTTCAACATTCTTCATGTTGATCAGAAGTCTCTTTGTAGTTGCTTTGGGTCTTCAATCATCCAAACACTTATTTTCACAGTTAATGAATTCCCTTTTTCGTGCACCTATGTCTTTTTATGACTCCACACCTTTGGGAAGGATACTTAGTAGGGTTTCAGCAGATATGAGCATTGTGGATCTTGATATCCCATTTAACCTCGCTTTTACTGTGGGAGGCACGATAAATTTTTATTCTAGTCTTTCGGTTTTAGCCGTTGTCACTTGGCCAGTATTGATTGTCTCTATACCATTGGTATATGTTGCAATTCGTTTGCAGAGATACTACTTTAACTCTGCAAAAGAGTTGATGCGGATCAATGGCACGACAAAATCCTTTGTAGCTAATCATGTAGCTGAGAGTGTTGCTGGAATGGTAACCATAAGGGCTTTTGAGTCGGAAGATCGTTTTTTTAAGAAGAATCTTGATCTGATTGATGTCAATGCTAGACCTTTCTTCCATATCTTTTCCTCAAATGAGTGGTTGATCCTACGGTTAGAAACAACGAGTGCAGTTCTTCTTGCCTCGGCGGCACTTTGCATGGTTGTGCTTCCACCTGGCACTTTCTCCTCTGGATTTATTGGACTGGCCCTTTCTTATGGCCTTACATTAAATGCTTCCCTAGTATTTTCAATTCAAAGCCAATGCACTCTAGCAAATTATATAATATCTGTCGAAAGGCTAAGTCAATATATGCATATACCAAGTGAAGCCGAAGAGGTGATCGGAAGAAATCGTTCTCCTTTGAATTGGCCACATGCAGGCAGAGTAGAAATAAATGATTTGCAGATTCAATACAGGCCTGATGCCCCGCTTGTACTCCATGGGATCACATGCACATTTGAAGGAGGGGACAAGATTGGTATTGTAGGCAGGACGGGCAGTGGAAAATCCACTCTTATAGGCGCTTTGTTTCGTCTCGTGGAACCGTCAGGAGGAAAAATTGTAGTTGATGGCATAGATATCTCTTCTATTGGCCTTCATGATTTGAGGTCACATTTTGGTGTTATACCTCAGGATCCTACTCTTTTTAATGGGACAGTCAGATATAATTTGGACCCTTTGTCTCAACACTCTGATCAAGAAATATGGAAGGTTCTTGGGAAATGTCAGTTAAGAGAAACTGTCCAAGAGAAAAAAGATGGCTTAGACAGTTCAGTTATTGAAGATGGATCAAACTGGAGCATGGGACAAAGGCAGCTATTTTGTCTGGGACGTGTACTTTTGAGGAGAAGTAGGATATTGGTGCTCGATGAAGCAACTGCATCGATCGACAATTCAACCGATTTGATCTTGCAGAAAACCATTAGGACTGAGTTTGCAGATTGTACAGTAATCACAGTAGCACACAGGATACCAACTGTGATGGATTGCACTAAGGTTCTTTCCATCAGTGATGGAAAACTGGTGGAGTATGATGAGCCAATGAATTTAATGAAGAGACAAGGATCACTGTTTGGGCAGCTTGTTAATGAATACTGGTCTCATTTTCAGTCTGCAGAATCATGTTGA 4434 0.3972 MVMKYFWSMICEDSGCSDTEGKPFCYDFKYLKDPSTCINHLFIISIDVLLLIMLLFIKIQKSLSTPFQGLVQGQVHRYSNLQLVSAIINGSLGLVHLCFGIWVLEEKLRRTHTTLSHDLWLLELFQGCTWLLIGLTVSLQMKQLPRTWLRLFLVFVFLVSGFFCILSLFYAVSGGELSLKIVLDVLSFPGAILLLVCVYKCEDTDGEIDESLYAPLSGKFDSISYVTPLAKAGIFNRMSFWWLNPLMKRGQEKTLQDEDIPMLRESDRAESCYLLFVDQLTKQKQKESQSQTSLFWTIILCHWREILISGVFALLKVLTLSCGPLLLNAFILVAEGNESFKYEGYALAISLFFIKIIESISQRQWYFRTRLIGMKVRSLITAAIYKKQLRLSNAARLTHSGGEIMNYVTVDAFRIGEFPFWIHQTWTTIVQLCMALVILFNAVGLATIASLVVIVLTVLCNTPLAKLQHKFQSKLMAAQDERLKASSEALLNMKVLKLYAWETHVKNAIESIRNVELEWLSAFQLKRAYGVFLFWTSPVLVSAASFCACYFLNVPLHANNVFTFVATLRLVQEPITNIPDVIGVIIQAKVAFARIVKFLEAPELENENFRNRRFNENLRGSILFNSADFSWEDNVSKSTLRNINLEVRHGQKVAICGEVGAGKSTLLAAILGEVPNTKGTIEVYGKFAYVSQTAWIQTGTIQENILFGSALDVQRYQETLHRSSLMKDLELFPHGDLTEIGERGVNLSGGQKQRIQLARALYQNADVYLLDDPFSAVDAHTAKSLFNEYVMEGLTGKTILLVTHQVEFLPVFDSVLLMSDGEIVQAAPYDHLLTTSQKFQDLVNAHKETVGSNQLHDLTSAQRYSTSAREIKQVYMVKPITASNGNQLIKQEEREIGDAGLKPYLKYLNQIKGYIYLFVAALCHLTFVTCQILQNSWMGANVDNPHVSTLRLIVVYVLIGVISTFFMLIRSLFVVALGLQSSKHLFSQLMNSLFRAPMSFYDSTPLGRILSRVSADMSIVDLDIPFNLAFTVGGTINFYSSLSVLAVVTWPVLIVSIPLVYVAIRLQRYYFNSAKELMRINGTTKSFVANHVAESVAGMVTIRAFESEDRFFKKNLDLIDVNARPFFHIFSSNEWLILRLETTSAVLLASAALCMVVLPPGTFSSGFIGLALSYGLTLNASLVFSIQSQCTLANYIISVERLSQYMHIPSEAEEVIGRNRSPLNWPHAGRVEINDLQIQYRPDAPLVLHGITCTFEGGDKIGIVGRTGSGKSTLIGALFRLVEPSGGKIVVDGIDISSIGLHDLRSHFGVIPQDPTLFNGTVRYNLDPLSQHSDQEIWKVLGKCQLRETVQEKKDGLDSSVIEDGSNWSMGQRQLFCLGRVLLRRSRILVLDEATASIDNSTDLILQKTIRTEFADCTVITVAHRIPTVMDCTKVLSISDGKLVEYDEPMNLMKRQGSLFGQLVNEYWSHFQSAESC 1477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0970 1477 CDD ABCC_MRP_domain1 622 822 - -
Lal2g0970 1477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 615 845 IPR027417 -
Lal2g0970 1477 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1231 1465 IPR003439 GO:0005524
Lal2g0970 1477 Gene3D ABC transporter type 1, transmembrane domain 880 1213 IPR036640 GO:0005524|GO:0016021
Lal2g0970 1477 Gene3D ABC transporter type 1, transmembrane domain 278 604 IPR036640 GO:0005524|GO:0016021
Lal2g0970 1477 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 307 587 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal2g0970 1477 CDD ABCC_MRP_domain2 1229 1449 - -
Lal2g0970 1477 CDD ABC_6TM_ABCC_D1 308 595 IPR044746 GO:0140359
Lal2g0970 1477 SUPERFAMILY ABC transporter transmembrane region 904 1211 IPR036640 GO:0005524|GO:0016021
Lal2g0970 1477 Pfam ABC transporter transmembrane region 915 1156 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal2g0970 1477 Pfam ABC transporter transmembrane region 307 572 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal2g0970 1477 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 74 1476 - -
Lal2g0970 1477 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 74 1476 - -
Lal2g0970 1477 ProSitePatterns ABC transporters family signature. 747 761 IPR017871 GO:0005524
Lal2g0970 1477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1222 1458 IPR027417 -
Lal2g0970 1477 CDD ABC_6TM_ABCC_D2 913 1206 IPR044726 GO:0140359
Lal2g0970 1477 Pfam ABC transporter 1248 1396 IPR003439 GO:0005524
Lal2g0970 1477 Pfam ABC transporter 640 774 IPR003439 GO:0005524
Lal2g0970 1477 SUPERFAMILY ABC transporter transmembrane region 295 600 IPR036640 GO:0005524|GO:0016021
Lal2g0970 1477 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 624 845 IPR003439 GO:0005524
Lal2g0970 1477 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 918 1194 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal2g0970 1477 SMART AAA_5 649 822 IPR003593 -
Lal2g0970 1477 SMART AAA_5 1257 1449 IPR003593 -
Lal2g0970 1477 Gene3D - 617 851 IPR027417 -
Lal2g0970 1477 Gene3D - 1215 1466 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0970 Lal-Chr2 6519959 6529892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0970 471 833 Calmodulin-binding Proteins AT2G36910 26.817 3.11e-27 119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0970 2 6519959 6529892 Lal2g0970 2 6519959 6529892 ECH
Lal2g0970 2 6519959 6529892 Lal12g0076 12 489349 496186 PCT
Lal2g0970 2 6519959 6529892 Lal24g0066 24 401914 414902 PCT
Lal12g0076 12 489349 496186 Lal2g0970 2 6519959 6529892 PCT
Lal24g0066 24 401914 414902 Lal2g0970 2 6519959 6529892 PCT