Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0943 ATGAAGTTCTGTAAGAAATACCAGGACTACATGCTGCAAGAGCAGGAGAATAAGCTTCCTGGGGTTGGCTTCAAGAAGCATAAAAAGATCTTGAAGAAGTGCAAAAGAAGAGACTATCATTCCCACAAAGACCATACTGAATCCCATGCAGTCAAAACCACCCATGATCATTGTCCAGTGTGTGATGGGACCTTCTTCCCTTCCCTTCTAAATGAAATGACAGCAATAGTTGGCTGCTTTAATCAACGGGCAGAGACATTTTTGGAGCTACAACTCGCTTCTGGTTTCAGAAAATACTTTTCTTGGTTCCTAGGAAAATTACTGGGGAACAAACATGCTGCTATAGTTCAAGAAGGCAAAGATATAATTACTTATGCACTCATAAATGCCATTGCAATTAGAAAAATACTAAAGAAATATGATAAGATTCATTATTCGAAGCAAGGGCAACTGTTCAAGTCACAAGCACAGAGTTTGCATAAGGAAATTCTTCCAAGTCCCTGGCTTTATGAGCTTTTGGCTTTCCACGTAAATTTAAGGGAAACCCAAGTCAATTCCATGAAGGAACCTGCTTTGTTTGAAGGATTTTCCCTCACATTTAGGGATGGAAAACCATCAATTACTTGTGAATTCTTTGATTTCATCAAAATCGATATAGACTTGACTTGTTCCATATGCTTAAATACAGTGTTTGATCCAGTTTCTTTGACTTGTGGCCATATATTCTGTTTTATTTGTGCTTGCTCAGCTGCATCAGTTTCTATTGTTAATGGACTTAAGACAGCAGATCATAGAAATAAATGTCCTTTATGCCGAGAGGGAGGAGTTTATGAAGGCTCTGTGCACTTAGAAGAACTAAATATTCTGTTAGGCCGAAAGTGTAAGGAATACTGGGAGGAAAGACTTGAGAGAGAGAGGGTAGAAAGGAACATTGGGAGTTGCAGTGTAGGATGTTCATGGGTGTCTAAACTGAACAACCAACTTTCTACCTCTGCTATAATTCAAAATTACTTTTATATTGAAATGAAACCATGTTTGGTTCTTGTTTTGTTTCTTATGTAA 1062 0.3795 MKFCKKYQDYMLQEQENKLPGVGFKKHKKILKKCKRRDYHSHKDHTESHAVKTTHDHCPVCDGTFFPSLLNEMTAIVGCFNQRAETFLELQLASGFRKYFSWFLGKLLGNKHAAIVQEGKDIITYALINAIAIRKILKKYDKIHYSKQGQLFKSQAQSLHKEILPSPWLYELLAFHVNLRETQVNSMKEPALFEGFSLTFRDGKPSITCEFFDFIKIDIDLTCSICLNTVFDPVSLTCGHIFCFICACSAASVSIVNGLKTADHRNKCPLCREGGVYEGSVHLEELNILLGRKCKEYWEERLERERVERNIGSCSVGCSWVSKLNNQLSTSAIIQNYFYIEMKPCLVLVLFLM 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0943 353 ProSitePatterns Zinc finger RING-type signature. 238 247 IPR017907 -
Lal2g0943 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 335 IPR013083 -
Lal2g0943 353 ProSiteProfiles SPX domain profile. 1 154 IPR004331 -
Lal2g0943 353 Pfam RING-type zinc-finger 223 269 IPR027370 -
Lal2g0943 353 SMART ring_2 223 271 IPR001841 -
Lal2g0943 353 ProSiteProfiles Zinc finger RING-type profile. 223 272 IPR001841 -
Lal2g0943 353 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 309 IPR033326 -
Lal2g0943 353 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 309 - -
Lal2g0943 353 SUPERFAMILY RING/U-box 215 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0943 Lal-Chr2 6326539 6331259 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0943 223 292 C3H Transcription Factor Family AT4G27470 34.286 9.45e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0943 K16275 - gmx:100787904 469.544