Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0934 ATGTATGGCCGAATGCAGGATTCTAATGGTTCTATTCATGATAAGTGTGAAAGTAGACTATATATCGGTAACCTTGATCTCAAAATTACAGAAGCAACTCTGCTTAAAATGTTTTCTCCTTTTGGAAAGATTGTTTCGGAGGACTTCCTGTGGCACACCCGTGGCCCTAAACGTGGGGCACCCCGCGGTTTTGCTTTTATCCAGTATGACACAAGAGAGGAAGCTGAATTGGCCAAGGACCAAATGCATGGGAGGTTAGCTTGTGGCCGGCCATTGGTTGTTCGTCTCGCGAGCGAGAAGTACATGTTGGAAACTGCTGAGAACTCTATGAAAGGTTCAGGAGAAGGGCACAAGATGCATCTCACTGGTGGTACCATGGGGCAGACAAGTAGAAGTGCAAAAATAGCTGCAATAAAGAACAAATTGAAATCACTAGAGGAGGAAAGTTCTAGGAGCAAGAAGCAGAAGCAAACTGAGGATACTTCTTGA 489 0.4479 MYGRMQDSNGSIHDKCESRLYIGNLDLKITEATLLKMFSPFGKIVSEDFLWHTRGPKRGAPRGFAFIQYDTREEAELAKDQMHGRLACGRPLVVRLASEKYMLETAENSMKGSGEGHKMHLTGGTMGQTSRSAKIAAIKNKLKSLEEESSRSKKQKQTEDTS 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0934 162 MobiDBLite consensus disorder prediction 124 162 - -
Lal2g0934 162 PANTHER RNA-BINDING PROTEIN 18-RELATED 9 159 - -
Lal2g0934 162 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 92 IPR000504 GO:0003723
Lal2g0934 162 MobiDBLite consensus disorder prediction 140 162 - -
Lal2g0934 162 SUPERFAMILY RNA-binding domain, RBD 8 104 IPR035979 GO:0003676
Lal2g0934 162 CDD RRM_RBM18 19 98 IPR039157 -
Lal2g0934 162 SMART rrm1_1 19 95 IPR000504 GO:0003723
Lal2g0934 162 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 99 IPR000504 GO:0003723
Lal2g0934 162 Gene3D - 4 135 IPR012677 -
Lal2g0934 162 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 9 159 - -
Lal2g0934 162 Coils Coil 135 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0934 Lal-Chr2 6287214 6288092 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0934 18 121 Eukaryotic Initiation Factors Gene Family AT3G16380 30.769 5.49e-12 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0934 K24527 - gmx:100804800 229.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0934 2 6287214 6288092 Lal2g0934 2 6287214 6288092 ECH