Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0907 ATGGCTCCGCCGCCCCTGCCGGTGGAACACAACGGCGACTCCGCTGCCTCAGCAGAATCTCAGAGATCTATTCCGACTCCGTTTCTCACCAAAACCTATCAGCTCGTTGAGGACCAATCAATCGACGACGTTATTTCTTGGAACGACGATGGATCCACCTTCATCGTTTGGAATCCTACCGTTTTCGCTAGAGATTTGTTACCTAAATATTTCAAACACAACAATTTCTCTAGCTTCGTTCGCCAACTCAACACTTACGGGTTCAGGAAAGTTGTACCTGATCGTTGGGAATTCTCGAACGAGTATTTCCGCCGAGGTGAGAAGCGGCTTCTGTGTGAAATTCAGCGACGGAAGTTCTCGTCGCAGTGTCCGACACCTCCATCGTTGTTGACGGAAACCGCGACGGTTGTGGTTCCCTCACCGATGCTGCTAACCGCGATACCTACAGCGATGCCGATTATTTCACCGTCGAATTCAGGTGAGGAGCAAGTGATATCATCGAACTCGTCGCAAACTCCGGCGGAGCTCATCGACGAGAACGAGAGGCTGAGGAAAGAGAATGTTCAACTCTCCAAGGAACTCACCGAGATGAGATCCATATACAACAATATTTTCTCTCTGGTGTCGAATTACGCCAACAACACCACCGCCAACAACAATCACCACCAATCGGAGCAACGAAGCAGAGAGTCTGGTTTAACGGCGGTGAAACCGCTTGATTTGATGTCGATAAAGCGAACTTCCGAAGATGAAACCGCAACGGTTACTGTGGGAAAAAAGATGAATATGAAGCTCTTTGGTGTAGCGCTTGGAGCAATGAGAGATAGAGAGGGAGGTGAAGGTTGCGATTTCGGTGAAACGGAAGAAGATGATACTCTGTTGCGGTTACATCAACCCAATCCTGCAGACGTAAAATCAGAGCCGTTAGATTCTCAGAACAATCGAGATAACAATAACAACACTAACCAAAAAACATTGTGGCTAAACCAATGCCACAAAGCAAATCAGAGAGTTTGTAATTGA 1023 0.4751 MAPPPLPVEHNGDSAASAESQRSIPTPFLTKTYQLVEDQSIDDVISWNDDGSTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNEYFRRGEKRLLCEIQRRKFSSQCPTPPSLLTETATVVVPSPMLLTAIPTAMPIISPSNSGEEQVISSNSSQTPAELIDENERLRKENVQLSKELTEMRSIYNNIFSLVSNYANNTTANNNHHQSEQRSRESGLTAVKPLDLMSIKRTSEDETATVTVGKKMNMKLFGVALGAMRDREGGEGCDFGETEEDDTLLRLHQPNPADVKSEPLDSQNNRDNNNNTNQKTLWLNQCHKANQRVCN 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0907 340 Pfam HSF-type DNA-binding 28 117 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal2g0907 340 ProSitePatterns HSF-type DNA-binding domain signature. 67 91 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal2g0907 340 PRINTS Heat shock factor (HSF) domain signature 28 51 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal2g0907 340 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal2g0907 340 PRINTS Heat shock factor (HSF) domain signature 79 91 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal2g0907 340 Coils Coil 180 200 - -
Lal2g0907 340 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 11 325 IPR027725 -
Lal2g0907 340 MobiDBLite consensus disorder prediction 305 324 - -
Lal2g0907 340 SMART hsfneu3 24 117 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal2g0907 340 MobiDBLite consensus disorder prediction 1 22 - -
Lal2g0907 340 MobiDBLite consensus disorder prediction 299 324 - -
Lal2g0907 340 SUPERFAMILY "Winged helix" DNA-binding domain 25 117 IPR036390 -
Lal2g0907 340 Gene3D - 20 118 IPR036388 -
Lal2g0907 340 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A 11 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0907 Lal-Chr2 6045236 6046798 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0907 1 340 HSF AT5G62020 45.938 2.87e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lal2g0907 HSF_DNA-bind 4.9e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0907 K09419 - gmx:100812267 444.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0907 2 6045236 6046798 Lal2g0907 2 6045236 6046798 ECH