Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0891 ATGGCCTCTGCATCAACAACACTATGTCTCCCTCCTCTTCCTTATTCTCTCAGAACTCTGAAACCAACACTCTCTCCCTTTCTCTTTTCTCAACAATCACTCCCTTTCTCTCACTCCACGCTCCTTACCACCCCACGCGCCTACGTCACTGGACCCGTATCTGACCCCATTTCCGATGACCCGGATCCGAATATTGATGGGTCGGTTCCCGAGAAGGTCAAGCCACGTGGCGTTATTAGCAGAGAGCTTCTTTGGACGCTTTTGATGAAGCACAAGTTGAGGCTTGTTGTTTTGGTTGCAACTCTTTTTGCATGCAGTATCTGCACTCTATCTATGCCCATTTTCTCTGGGAGGTTTTTTGAAGTTCTTATTGGTACTAGACCTGAGCCACTGTGGAAACTGCTCACTAAAATGGGAGTTCTGTATGCACTGGAGCCAATTTTAACTGTTATTTTCGTTATAAACATAAACATAGTGTGGGAGAAAGTTATGTCAACTCTAAGAGCTCAGATCTTTGGAAGAATTTTGATTCAGAAGGTTGAATTTTTTGACAAATACAAGGTTGGTGAACTGACTGGTTTGTTAACATCTGATTTGGGTTCTCTTAAAGGTATTGTGAGTGATAATGTTTCAAGAGATCGCGGATTCAGGGCATTAACCGAGGCAAGCAACTCTACACCAATGAACGTACCACAATTTTGTTGTTTGAGTATGGAAGAATTGCTTCCTCACCTGTCAATAACCCTTTTATTGTCACTTATGGTTGTCATAGGGACAATATTCGTACTTTTTGCTTTATCTCCTCAACTGGCACCAATTATGGGTGTTCTGGTGCTTGCAGTTTCTGTTTCAGTTGCTGTTTACAAGAGATCAACTTTGCCGGTCTTTAAAGAACATGGTTTGGCTCAAGCATCTATATCTGACTGTGTATCAGAAACATTTTCTGCTATTCGAACAGTAAGATCCTTTGGTGGCGAAAAGCGCCAAATGTTTACATTTGCTAATCAGGTTCTATCATTCCAATCAAGTGGGATAAAGCTTGGAACCTTCAAATCTTTGAATGAATCCTTGACGAGAGTTGCTATTTACATTTCTTTGGTCGCATTATATTGTCTCGGTGGAAGCAAAGTTAAGGCGGGTGAGCTCTCTGTTGGACATATGGCATCTTTTATTGGATACACTTTCACTTTAACATTTGCGGTTCAAGGACTGGTTAATACTTTTGGAGATCTTCGTGGTACTTTTGCTGCTGTTGAAAGGATAAACTCTGTTTTGTCTGAAGTTCAAATTGATGATGCCCTTGCCAATGGCTTAGAAAGAGAGCTGAAACAAAAAGCCGGGGGTGATGAAAACTATAAATTGTTTTTCTCTAGTAATTCTGATGAGAAAAACCAAAGTAATTATTTACGGTACATGTCAGCACTAAAAACATCCAGCAATTTGGTTAGCTTAACTTGGTCTGGAGATGTTTGCCTTGAAGATGTGTATTTCTCTTACCCTTTAAGGCCAGATGTGGAAGTCTTACGTGGGTTAAATTTAAGACTAAAATGTGGAACTGTAACTGCATTGGTGGGTCCGAGTGGTGCAGGCAAAAGTACAATTGTACAACTGTTGGCTCGCTTTTACGAGCCAACAACAGGTTGTATAACAGTGGGAGGAGAGGATGTTCGAACATTTGACAAGAGCGAATGGGCCCGGGTTGTCTCTATTGTAAACCAAGAGCCTGTTCTGTTTTCGGTGTCTGTCGGAGAAAATATTGCGTATGGGCTCCCAGATGATGATGTTTCAAAAGATGACGTGATTAAGGCAGCGAAAGCTGCAAATGCTCATGACTTTATACTTTCACTTCCACAGGGCTATGATACACTCGTTGGTGAGCGTGGAGGCCTATTGAGTGGAGGACAGAGACAGAGAATCGCCATTGCCCGAGCTCTCCTAAAAAACGCTCCAATCCTTATACTTGATGAGGCTACAAGTGCCTTAGATGCTGCCAGCGAGCGCTTGGTTCAGGACGCTCTCAACCATTTGATGAAGGGGAGGACGACGTTAGTAATAGCTCACCGGTTAAGCACAGTTCAAAATGCCCACCAAATTGCACTGGTTACTGATGGGGGGATTGCAGAGATAGGCACCCATCTTGAGCTAGTGGCTAAGAAGGGCCATTATGCCTCACTGGTCAGCACTCAGAGGCTTGCATTTGAATGA 2205 0.4286 MASASTTLCLPPLPYSLRTLKPTLSPFLFSQQSLPFSHSTLLTTPRAYVTGPVSDPISDDPDPNIDGSVPEKVKPRGVISRELLWTLLMKHKLRLVVLVATLFACSICTLSMPIFSGRFFEVLIGTRPEPLWKLLTKMGVLYALEPILTVIFVININIVWEKVMSTLRAQIFGRILIQKVEFFDKYKVGELTGLLTSDLGSLKGIVSDNVSRDRGFRALTEASNSTPMNVPQFCCLSMEELLPHLSITLLLSLMVVIGTIFVLFALSPQLAPIMGVLVLAVSVSVAVYKRSTLPVFKEHGLAQASISDCVSETFSAIRTVRSFGGEKRQMFTFANQVLSFQSSGIKLGTFKSLNESLTRVAIYISLVALYCLGGSKVKAGELSVGHMASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSVLSEVQIDDALANGLERELKQKAGGDENYKLFFSSNSDEKNQSNYLRYMSALKTSSNLVSLTWSGDVCLEDVYFSYPLRPDVEVLRGLNLRLKCGTVTALVGPSGAGKSTIVQLLARFYEPTTGCITVGGEDVRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDDDVSKDDVIKAAKAANAHDFILSLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAASERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALVTDGGIAEIGTHLELVAKKGHYASLVSTQRLAFE 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0891 734 CDD ABC_6TM_TAP_ABCB8_10_like 102 421 - -
Lal2g0891 734 SMART AAA_5 517 721 IPR003593 -
Lal2g0891 734 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 96 413 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal2g0891 734 SUPERFAMILY ABC transporter transmembrane region 238 427 IPR036640 GO:0005524|GO:0016021
Lal2g0891 734 CDD ABC_MTABC3_MDL1_MDL2 492 729 - -
Lal2g0891 734 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 490 728 IPR003439 GO:0005524
Lal2g0891 734 Pfam ABC transporter 508 659 IPR003439 GO:0005524
Lal2g0891 734 Gene3D - 488 731 IPR027417 -
Lal2g0891 734 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 481 729 IPR027417 -
Lal2g0891 734 Gene3D ABC transporter type 1, transmembrane domain 81 432 IPR036640 GO:0005524|GO:0016021
Lal2g0891 734 PANTHER ABC TRANSPORTER B FAMILY MEMBER 28 40 732 - -
Lal2g0891 734 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 40 732 IPR039421 -
Lal2g0891 734 SUPERFAMILY ABC transporter transmembrane region 84 210 IPR036640 GO:0005524|GO:0016021
Lal2g0891 734 Pfam ABC transporter transmembrane region 238 400 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal2g0891 734 Pfam ABC transporter transmembrane region 98 210 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal2g0891 734 ProSitePatterns ABC transporters family signature. 631 645 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0891 Lal-Chr2 5856969 5863255 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0891 487 734 Calmodulin-binding Proteins AT2G36910 53.785 4.48e-74 259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0891 2 5856969 5863255 Lal2g0891 2 5856969 5863255 ECH