Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0890 ATGGACTTAGACGGGGGCAACAAGCGCGTGTTCAACAGACTCGGTGGACCCGCGGGTGACCCAAGAAACCAGAAAGTGTGCTATCATTGGCAAGCGGGGAAGTGCAATCGCCACCCATGCGCGTTTCTTCATAGTGAGTTGCCTCCTCACAACTCCAATGGCGCCCCTTCCAAAAGGCCTTATGGGTCTGCAGAAAATTTAAGCTTTAACGGTCCACCGCGCCGTACTACGAATTTCAACACATGGGGGCGTGGCGGTGGGGGAAGAGGCGGCGGTGGTGGTAGTGGTGGTAGAGGTAGTGGCTGCGGCGGAGAAGTAAAGAAGGCTGATAAAATTTGTAATTATTGGGTTCAGGGGAATTGTAGTTTCGGAGAGAGGTGTAAGTTCCTTCATTCTTGGAGTTTAGGGGATGGTTTTTCTCTGTTGACCCAGCTTGAAGGCCATAAGAACGTTGTGAGTGGCATAGCTTTTCCCTCTGGTTCGAATAAGCTTTATACGGGAAGTACTGATGAAACTGTAAGAGTTTGGGACTGCCAATCTGGACAGTGTACGGCTGTGATCAATCTTGGTGGTGAAGTAGGTTGCATGATCAGTGAAGGTCCTTGGGTTTTTGTTGGCATACCCAATTTTGTCAAGGCCTGGAACACACAAAATTTAATAGAGCTAAGTCTGAGTGGTCCCGTTGGACAAGTTTATGCTCTTGTTGTGATTAATGATATGCTCTTTGCTGGTACACAGGATGGATCTATATTATTTTGGAAGTTTAATTTAACTGCCAACTGCTTTGAGCCGGCTGCATCACTTAAAGGTCATTCCCATGGGGTTGTGTCATTAGTTGTTGGAGCTAATAGACTCTACTCTGGTTCAATGGACAACACAATAAGAGTCTGGAACCTTGAAACCCTGCAGTGTTTACAGACACTTACAGAACACACTTCTGTGGTGATGTCTGTACTCTGCTGGGACCAGTTTCTGTTATCCTGTTCATTGGACAAGACTATCAAGGTTTGGTTTGCCACAGAAAGTGGAAATCTGGAAGTCACATACACGCACAATGAAGAACATGGTATACTCACTCTCTGTGGGATGCATGATTCTCATGGCAAACCCATTTTGGTGTGTTCTTGCAATGATAATACTGTGCGCCTCTATGATCTGCCATCATTTGCAGAGAGAGGGAAGATATTCACAAAACAGGAAGTAAGAGCAATTGAGATAGGGCCTGGTGGCATATTCTTCACTGGTGATGGAACTGGTCAATTGAAAGTGTGGAATTGGATAGCTGAGCCAACTCCTTCCACCCAATAA 1308 0.461 MDLDGGNKRVFNRLGGPAGDPRNQKVCYHWQAGKCNRHPCAFLHSELPPHNSNGAPSKRPYGSAENLSFNGPPRRTTNFNTWGRGGGGRGGGGGSGGRGSGCGGEVKKADKICNYWVQGNCSFGERCKFLHSWSLGDGFSLLTQLEGHKNVVSGIAFPSGSNKLYTGSTDETVRVWDCQSGQCTAVINLGGEVGCMISEGPWVFVGIPNFVKAWNTQNLIELSLSGPVGQVYALVVINDMLFAGTQDGSILFWKFNLTANCFEPAASLKGHSHGVVSLVVGANRLYSGSMDNTIRVWNLETLQCLQTLTEHTSVVMSVLCWDQFLLSCSLDKTIKVWFATESGNLEVTYTHNEEHGILTLCGMHDSHGKPILVCSCNDNTVRLYDLPSFAERGKIFTKQEVRAIEIGPGGIFFTGDGTGQLKVWNWIAEPTPSTQ 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0890 435 Pfam WD domain, G-beta repeat 141 177 IPR001680 GO:0005515
Lal2g0890 435 Pfam WD domain, G-beta repeat 303 337 IPR001680 GO:0005515
Lal2g0890 435 Pfam WD domain, G-beta repeat 264 298 IPR001680 GO:0005515
Lal2g0890 435 MobiDBLite consensus disorder prediction 51 101 - -
Lal2g0890 435 SMART c3hfinal6 22 46 IPR000571 GO:0046872
Lal2g0890 435 SMART c3hfinal6 109 133 IPR000571 GO:0046872
Lal2g0890 435 MobiDBLite consensus disorder prediction 69 83 - -
Lal2g0890 435 SUPERFAMILY CCCH zinc finger 106 132 IPR036855 GO:0046872
Lal2g0890 435 PRINTS G protein beta WD-40 repeat signature 164 178 IPR020472 -
Lal2g0890 435 PRINTS G protein beta WD-40 repeat signature 285 299 IPR020472 -
Lal2g0890 435 PRINTS G protein beta WD-40 repeat signature 325 339 IPR020472 -
Lal2g0890 435 Gene3D - 235 434 IPR015943 GO:0005515
Lal2g0890 435 ProSitePatterns Trp-Asp (WD) repeats signature. 285 299 IPR019775 -
Lal2g0890 435 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 145 177 - -
Lal2g0890 435 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 268 301 - -
Lal2g0890 435 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 431 - -
Lal2g0890 435 Gene3D - 102 131 - -
Lal2g0890 435 Gene3D - 132 234 IPR015943 GO:0005515
Lal2g0890 435 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 307 IPR001680 GO:0005515
Lal2g0890 435 ProSiteProfiles Zinc finger C3H1-type profile. 107 134 IPR000571 GO:0046872
Lal2g0890 435 SMART WD40_4 388 425 IPR001680 GO:0005515
Lal2g0890 435 SMART WD40_4 217 254 IPR001680 GO:0005515
Lal2g0890 435 SMART WD40_4 301 338 IPR001680 GO:0005515
Lal2g0890 435 SMART WD40_4 342 385 IPR001680 GO:0005515
Lal2g0890 435 SMART WD40_4 138 177 IPR001680 GO:0005515
Lal2g0890 435 SMART WD40_4 261 298 IPR001680 GO:0005515
Lal2g0890 435 ProSiteProfiles Trp-Asp (WD) repeats profile. 145 186 IPR001680 GO:0005515
Lal2g0890 435 PANTHER - 1 431 IPR044715 -
Lal2g0890 435 SUPERFAMILY WD40 repeat-like 132 426 IPR036322 GO:0005515
Lal2g0890 435 Pfam Zinc finger domain 113 131 - -
Lal2g0890 435 ProSiteProfiles Zinc finger C3H1-type profile. 21 47 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0890 Lal-Chr2 5850939 5855955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0890 112 337 Acyl Lipid Metabolism Gene Families AT3G18860 26.230 3.35e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal2g0890 WD40 2.4e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0890 - - lang:109352195 741.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0890 2 5850939 5855955 Lal2g0890 2 5850939 5855955 ECH
Lal2g0890 2 5850939 5855955 Lal1g0802 1 5464984 5470494 LSH
Lal2g0890 2 5850939 5855955 Lal9g0784 9 5588139 5594105 LSH