Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0881 ATGATTTTTGTGTGTGAGAAATGGGAATTTTCTTTTCAGTATGGAAGTTTTGCTGGCACAAAAGAAAGCATGGGAAAAAAAAGGAAAACTTGTGTCAAGATGCCCGGAAAACCAGATACCGATGATTGGCGAGCAGAGCGTGGCGAGCAGATTCAGTTTCAATCTTCCATTTTCTCTCAGTCTCAGCCTTGGTGGCAAGGAGTGAGGGGAAATGCGTCAAAATCTTCTTCAGCAGATCAGCAAAATGGTTCAGTCATGAATGGTGTAGCTCAATCAGAGACAAATGAGGGGCTGCTTCATGGAGTTGATTTCAATAAACAGATGCAGCCTGGAGCTGATAAATCAGGTGGGGATGTTGCCAAAGAGCACCAAAGCATCAAACATGCTCTGTCTTCAACTCCATATACCGTGGGAAAACACCTCGTTCCGAATTCCCAGATGGAACTTGTTGGTCATTCAGTTGTTTTAACATCTTATCCGTATTCAGATGCACAGTATGGTGGACTCTTGACTAACTTTGGGCAACAAGCTATGATAAACCCTCAATTGTATGGAATACATCATACTAGAATGCCTTTGCCACTTGAAATGGAAGAGGAGCCTGTTTATGTTAATGCAAAGCAGTATCATGGTATTTTGAGGCGGAGGCAGTCACGTGCTAAGGCTGAGCTTGAGAAGAAAGTGATTAAAGCTAGAAAGACTATGGAAGATTATTTATCATGCTTTATATGCTGGACTGCCGATATTCGTTTCGTTGTCAAGATCTCTTTGGCTATTTTGCTTTCTATTAGGACTTGTGTTTTCTTTTGCCTTGAAATCAATGCTCAAATTTGCTGGGGCCTGGAAGGGAACCCCGAAGTTACTTTTCCGTATCTTCATGAATCTCGTCACTTACATGCTCTGAGGAGGGCAAGGGGTAATGGAGGTCGCTTTCTCAATACAAAGAAGCTTGAAGGTAACAGTTCCGATGGCACTATAGGCAACAATAATGGTGCAAACCCCTTAACATTATCTGGCAGCTCATCTGCAGCTCATCATTTGGTTACCAACAACGGAATTCTCGTCTCATCAAATGATCAGTATGGTGCATCACAGTCCATGGTTGAGGACATCCATCAGGTGCAGAGTTTCACCATTGGTTACCATGATGGCAATGGTCTTTCATCACCGTACTATTCACAGTTAAATGGAAAAAAAGATGGAGACTGCTTTGGTAGAGAGAGGGAAAGCGTGCGCATGCATGGAGCCCCAAATGGGGCCGTAAAGTAA 1269 0.431 MIFVCEKWEFSFQYGSFAGTKESMGKKRKTCVKMPGKPDTDDWRAERGEQIQFQSSIFSQSQPWWQGVRGNASKSSSADQQNGSVMNGVAQSETNEGLLHGVDFNKQMQPGADKSGGDVAKEHQSIKHALSSTPYTVGKHLVPNSQMELVGHSVVLTSYPYSDAQYGGLLTNFGQQAMINPQLYGIHHTRMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKARKTMEDYLSCFICWTADIRFVVKISLAILLSIRTCVFFCLEINAQICWGLEGNPEVTFPYLHESRHLHALRRARGNGGRFLNTKKLEGNSSDGTIGNNNGANPLTLSGSSSAAHHLVTNNGILVSSNDQYGASQSMVEDIHQVQSFTIGYHDGNGLSSPYYSQLNGKKDGDCFGRERESVRMHGAPNGAVK 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0881 422 ProSiteProfiles NF-YA/HAP2 family profile. 198 314 IPR001289 GO:0003700|GO:0006355
Lal2g0881 422 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 290 311 IPR001289 GO:0003700|GO:0006355
Lal2g0881 422 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 200 234 IPR001289 GO:0003700|GO:0006355
Lal2g0881 422 Coils Coil 214 234 - -
Lal2g0881 422 MobiDBLite consensus disorder prediction 105 125 - -
Lal2g0881 422 PANTHER TRANSCRIPTION FACTOR Y SUBUNIT A-1, PUTATIVE-RELATED 56 234 - -
Lal2g0881 422 PANTHER TRANSCRIPTION FACTOR Y SUBUNIT A-1, PUTATIVE-RELATED 289 421 - -
Lal2g0881 422 ProSitePatterns NF-YA/HAP2 subunit signature. 203 223 IPR018362 GO:0003677|GO:0016602
Lal2g0881 422 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 56 234 IPR001289 GO:0003700|GO:0006355
Lal2g0881 422 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 289 421 IPR001289 GO:0003700|GO:0006355
Lal2g0881 422 MobiDBLite consensus disorder prediction 67 86 - -
Lal2g0881 422 Gene3D - 198 316 - -
Lal2g0881 422 SMART cbf3 256 314 IPR001289 GO:0003700|GO:0006355
Lal2g0881 422 SMART cbf3 197 254 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0881 Lal-Chr2 5737309 5743003 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0881 61 324 CCAAT-HAP2 Transcription Factor Family AT5G12840 33.577 8.59e-29 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lal2g0881 CBFB_NFYA 6.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0881 K08064 - gmx:100782085 276.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0881 2 5737309 5743003 Lal2g0881 2 5737309 5743003 ECH