Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0873 ATGACAGATCCTCGGTCCAAAGTTTTTGATGGATGGTTCAACTTCATGCCCCTTCATCCCTCTCACTGCTCTTATGATTCTCATGAACAATCCAGCTTCTTCTCTTCTTCCTCCTCTTCCTACCCTCTTTCTTATTCATCAAATAACAGGTTTGGAATTCAATCTGAAGCCTCATCATCTTCTAATATTGCATGTCCTTCTTCCCCTCCTCTCAGAGAGGCACTTCCTCTCATAAACAAGTTAAGCCTTATAAATCCGCACCAAAACATTGAACCCTCAAATGGTACTTATATTGCTGTAGAAGAGGACAAAGAAGTTGAGAGTTTTTTCACTGGTACTGAATATGATGATGGTGATGGAACAGCTGTGACTATGTCTCTTAACATAGGGCTTCCAAGAATGAATACTTCTTCTTCTGATCTGGGGTCAAGGAAGGTCTCAAGTACTTCAATGGTAATAGCTGAAAAGGAGGGGGTGAATATGATTTCTGGACACCCTTTTGATGGATTGAACAAGGGCCATTATTGGATACCCACCCCTTCTCAGATTCTCATTGGTCCTACACAGTTCTCATGTCATGTCTGCTCTAAAACTTTCAACAGATACAACAATCTTCAGATGCATATGTGGGGGCACGGATCTCAATACAGAAAAGGCCCTGATTCTCTAAAAGGAACACAACCAACAGCGATGCTAAGGCTTCCATGCTTTTGTTGTGCACCTGGTTGCAAGCACAACATTGACCACCCAAAATCAAAGCCTCTCAAGGATTTCAGAACCCTTCAAACTCATTATAAGAGAAAGCATGGAATGAAACCCTATATGTGCAGAAAATGTAGCAAAGCATTTGCAGTAAAAGGTGATTGGAGGACACATGAGAAGAACTGTGGCAAAATATGGTATTGTTTATGTGGGTCTGATTTCAAACACAAAAGGTCTCTAAAAGACCACATCAAAGCATTTGGCTATGGTCATGGAGTTTTTGGCATGGATTCACTGCAAGAAGAAGATGAAGCAACCTCCGAAGTTGAACATTATGGGGAGTGCTCATTGTGA 1056 0.4138 MTDPRSKVFDGWFNFMPLHPSHCSYDSHEQSSFFSSSSSSYPLSYSSNNRFGIQSEASSSSNIACPSSPPLREALPLINKLSLINPHQNIEPSNGTYIAVEEDKEVESFFTGTEYDDGDGTAVTMSLNIGLPRMNTSSSDLGSRKVSSTSMVIAEKEGVNMISGHPFDGLNKGHYWIPTPSQILIGPTQFSCHVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTAMLRLPCFCCAPGCKHNIDHPKSKPLKDFRTLQTHYKRKHGMKPYMCRKCSKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGYGHGVFGMDSLQEEDEATSEVEHYGECSL 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0873 351 Gene3D Classic Zinc Finger 252 323 - -
Lal2g0873 351 SMART c2h2final6 274 294 IPR013087 -
Lal2g0873 351 SMART c2h2final6 190 212 IPR013087 -
Lal2g0873 351 SUPERFAMILY beta-beta-alpha zinc fingers 183 212 IPR036236 -
Lal2g0873 351 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 1 345 - -
Lal2g0873 351 Pfam Zinc finger, C2H2 type 190 209 IPR013087 -
Lal2g0873 351 ProSitePatterns Zinc finger C2H2 type domain signature. 192 212 IPR013087 -
Lal2g0873 351 Gene3D Classic Zinc Finger 189 212 - -
Lal2g0873 351 PANTHER ZINC FINGER PROTEIN WIP2 1 345 IPR043584 GO:0003700|GO:0010468
Lal2g0873 351 ProSiteProfiles Zinc finger C2H2 type domain profile. 190 217 IPR013087 -
Lal2g0873 351 SUPERFAMILY beta-beta-alpha zinc fingers 255 294 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0873 Lal-Chr2 5652248 5654886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0873 1 344 C2H2 Transcription Factor Family AT3G57670 50.260 6.78e-117 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal2g0873 zf-C2H2 0.001 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0873 - - gmx:100794446 512.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0873 2 5652248 5654886 Lal2g0873 2 5652248 5654886 ECH