Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0867 ATGGACCACCTTATGTCTCAAGTTTATAGTGAAGATAAGATGAGTATTGTGTATAGTAATTCTCTTAAGTACTCTGAAGGAGAACTAAGCAGAAACCCAGAAATGGATCATTCTGACCAATACAATTCTGGTTCATTGTTAACAAGCCTTGTGGAAAATAACAACAACCATGGTTGTGTCAATGAGGAACATTTCAGAAGTGAGGATCATCATCAGCATTATACTCCTTCTACCACAAGCTCAGAAATGGAAACCATGTTTGCTAAGTTAATAGCATCACCTTCTAATAATAGATTGAGCAATTCAGAACTTTTGCATCATGACTTTGGAGGAGGCAAAACAGTGAAGGAAGAAACAGGGGACTCTGTTTCACAGAAACCACAGCACAACAATGGTTACTCTTATGGATCTCAGCCTCAGTTAGTTTACCAATCTCAGCAAATTCAAGGATTGGAAAATGGTTCTGTTGGTGATGTGAATGCTTTTGATGGTTCATTTAGTGCAGTGAGTTCCATGGCTTCAGAGAATTCCACACAAACTAAGATAGGTTCCAATCTCATTAGGCAAAAAAGCTCCCCTGCTGGGTTTTTCAACAATTTCTCAGTTGATAATGGTGTTGTAGCATCGAGAAATGTAGGAAGTTTTAGAGCTTGTGATGTCTCAAATGGACAAGCTACTACTACATCTACTAGTGGATTGCATGGTACTTTGAACTTCACATCAAAGATGCCACAGATTTCTGAAAATGGTAATGAAGGCCTTGTTGGAAATGATAATAGCAACACTGAATGTTATATGCCTAGCTTCACCAATGACTTTTGGGATGGCTCTGCATTCAATGCCCACAAAACAGCCAATAACAATGGTGAAATCATGTTTTCCATTTCAAATGCCATGGAAACTCAGGATGAGGATTTTGGATACCAAAAATTTGGTTTAACCCATCATATGAGTTTGCCTAGTTCTATTAACATGTCTGGCATGGAGAAGCTTTATCAAATTCAAGGATCTGTTCCATGGAAAATTCGAGCCAAAAGAGGCTTTGCCACTCACCCTAGAAGCATTGCAGAAAGGGAAAGAAGAACAAGAATTAGCTCAAGAATGAAGAAATTACAAGACCTTTTCCCAAAATCAGACAAGCAAACAAACACTGCAGATATGTTGGATTTAGCAGTTGAGTACATTAAAGACTTAAAGAAACAAGTTAAGATACTCACAAATACTAAGGCAAAATATCAAAAGAAAGGAGTGAATTTTTTCCTTGTAGTGAGTGCTACAAAATTAATGGCCATTAATCTTTTTGACAAAGAATGGGAGAATGAAGATACACCTTGCTTTCCTTCTTCAACATACATGTATAGAAGACAAGGCCACATTGTGTTTGGTTGCATGGCATTGGAGCTAAAGAAATTTCTGCTGGAAGGGTTGACAACCTTCAACCACCTGAAACATGGCCACTGCCGCCTCCTCCGTCTCCGTCTCGACCAAGATAACTACCTCATCAACATTATCTTACGTTATTCCTTCCACTTCGGCAACACACATTACACAAACCTCATTTTCAACCATACCCAACACCCAAATATTTATCTTTACAACACCATGATTCGTGGCATGGTATCAAATCACTCTTTCCATGATGCCATTCAACTCTACGCTTCCATGCGAAAAGACGGATTTACCCCTGATGACTTCACCTTCCCTTTTGTTCTCAAAGCGTGTGCTAGGCTTGATCATTTCAAACTCGGTCTCAACCTTCATTGCCTTGTTGTTAAAACCGGTTTCGATTGTGACGTGTTTGCTAAGACTAGTCTTGTTTGTTTGTATTCGAAATGCGGGTACTTAAGGGATGCACGTAAGGTGTTTGATGATATTCCTGAGAAGAATGTTGTTTCTTGGACCGCGATTATTTGTGGGTATATTGAGTCTGGGGGATATAAAGAAGCTGTTGATTTGTTTAGAGGCTTGCTGGAGATGGGTTTGAGACCGGATAATTTTACGCTTGTTCGTGTTTTATATGCGTGTACTAAGTTAGGGGATTTGAAGAATGGGGAATGGTTAGATAGGTATATAAGTGAGAGTGGTTTTCATAGGAATATGTTTTTGGCTACCTCTTTGGTTGATATGTACGCAAAATGTGGGAGTATGGAAGATGCACGTCGTGTGTTTGATGCGATGCCCGATAAGGATATTGTTTGTTGGAGTGCTATGATTCAGGGTTATGCTTCCAATGGGCTTCCTAAAGAAGCACTTGATTTGTTCTTTGAGATGCAGAAAGAAAATTTGAGACCTGATTGTTATGCCATGGTGGGTGTTCTTTCTGCATGTGCCCGGTTAGGAGCGTTGGACTTGGGAAATTGGGCTAAGGGTTTGATGGATACTAATGAGTTTTTGTCTAATCCTGTCATGGGCACTGCGTTGATCGACTTATATGCAAAATGTGGGAGCATGGGACAAGCAATGGAGATTTTCAAAATGATGAAGGGGAAAGATCGTGTAGTCTTTAATGCTGTTATTTCTGGACTAGCTATGAATGGACATGTTAGAGCTGCATTTGGAGTATTTGGCCAAATGGGAAAGTATGGTATTCATCCAGATGGGAATACTTTCGTTGGTTTACTTTGTGGGTGTACTCATGCTGGTTTGGTTAGTGATGGCCGGCGATATTTCAATAGCATGAGCGATGTCTTTAATGTAGCTCCTACTATCGAGCATTATGGATGCATGGTGGATCTCCTAGCCCGTGCAGGTTTGCTGGTTGAAGCACAGAATTTGATCAAGAGTATGCCAATAAAGGCTAATGTTATAGTTTGGGGGGCATTGTTGGGAGGATGCAGGTTACATCGGGATACCCAATTGGCAGAACATGTGTTGAAGCAGCTCATTGAATTAGAACCATGGAATTCAGGTCATTATATTCTCTTATCAAATATATACGCGGCAAGTCATAGGTGGGATGAAGCAGAAAGAATTAGGTCAACTGTGAATAAGAAGGGGATGCAAAAATTACCTGGATGTAGTTGGGTTGAAGTTGATGGGGTCGTTCATGAATTCCTTGTAGGAGACACTTCCCATCCTTTATCTCATAAGATATATGAAAAACTTGAGTGTTTATTTAAGGACTTGAGAGAAGCTGGTTATAATCCAACCACTGAGTTTGTGCTCTTTGATATAGAGGAGGAGGAGAAGGAATACTTCCTTGGCTGTCATAGTGAGAAGTTAGCTATTGCATTTGCACTTATCAGTAACAGTGCCAAAGATGTGATTCGCATTGTTAAAAATCTCCGTGTATGTGGTGATTGTCATGAGGCCATAAAACTCATTTCTAAAGTTACGGGAAGAGAGATAATCATTAGAGATAATAACAGATTCCATTGTTTCAGTGAAGGCTCATGTTCTTGTGGGGACTATTGGTAA 3417 0.3983 MDHLMSQVYSEDKMSIVYSNSLKYSEGELSRNPEMDHSDQYNSGSLLTSLVENNNNHGCVNEEHFRSEDHHQHYTPSTTSSEMETMFAKLIASPSNNRLSNSELLHHDFGGGKTVKEETGDSVSQKPQHNNGYSYGSQPQLVYQSQQIQGLENGSVGDVNAFDGSFSAVSSMASENSTQTKIGSNLIRQKSSPAGFFNNFSVDNGVVASRNVGSFRACDVSNGQATTTSTSGLHGTLNFTSKMPQISENGNEGLVGNDNSNTECYMPSFTNDFWDGSAFNAHKTANNNGEIMFSISNAMETQDEDFGYQKFGLTHHMSLPSSINMSGMEKLYQIQGSVPWKIRAKRGFATHPRSIAERERRTRISSRMKKLQDLFPKSDKQTNTADMLDLAVEYIKDLKKQVKILTNTKAKYQKKGVNFFLVVSATKLMAINLFDKEWENEDTPCFPSSTYMYRRQGHIVFGCMALELKKFLLEGLTTFNHLKHGHCRLLRLRLDQDNYLINIILRYSFHFGNTHYTNLIFNHTQHPNIYLYNTMIRGMVSNHSFHDAIQLYASMRKDGFTPDDFTFPFVLKACARLDHFKLGLNLHCLVVKTGFDCDVFAKTSLVCLYSKCGYLRDARKVFDDIPEKNVVSWTAIICGYIESGGYKEAVDLFRGLLEMGLRPDNFTLVRVLYACTKLGDLKNGEWLDRYISESGFHRNMFLATSLVDMYAKCGSMEDARRVFDAMPDKDIVCWSAMIQGYASNGLPKEALDLFFEMQKENLRPDCYAMVGVLSACARLGALDLGNWAKGLMDTNEFLSNPVMGTALIDLYAKCGSMGQAMEIFKMMKGKDRVVFNAVISGLAMNGHVRAAFGVFGQMGKYGIHPDGNTFVGLLCGCTHAGLVSDGRRYFNSMSDVFNVAPTIEHYGCMVDLLARAGLLVEAQNLIKSMPIKANVIVWGALLGGCRLHRDTQLAEHVLKQLIELEPWNSGHYILLSNIYAASHRWDEAERIRSTVNKKGMQKLPGCSWVEVDGVVHEFLVGDTSHPLSHKIYEKLECLFKDLREAGYNPTTEFVLFDIEEEEKEYFLGCHSEKLAIAFALISNSAKDVIRIVKNLRVCGDCHEAIKLISKVTGREIIIRDNNRFHCFSEGSCSCGDYW 1138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0867 1138 MobiDBLite consensus disorder prediction 109 123 - -
Lal2g0867 1138 Coils Coil 395 415 - -
Lal2g0867 1138 Gene3D Tetratricopeptide repeat domain 462 688 IPR011990 GO:0005515
Lal2g0867 1138 Gene3D Tetratricopeptide repeat domain 805 1025 IPR011990 GO:0005515
Lal2g0867 1138 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 629 663 IPR002885 -
Lal2g0867 1138 Pfam PPR repeat 905 929 IPR002885 -
Lal2g0867 1138 Pfam PPR repeat 805 830 IPR002885 -
Lal2g0867 1138 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 465 1131 - -
Lal2g0867 1138 Pfam PPR repeat family 831 877 IPR002885 -
Lal2g0867 1138 Pfam PPR repeat family 628 674 IPR002885 -
Lal2g0867 1138 Pfam PPR repeat family 729 778 IPR002885 -
Lal2g0867 1138 Pfam PPR repeat family 527 576 IPR002885 -
Lal2g0867 1138 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 351 413 IPR036638 GO:0046983
Lal2g0867 1138 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 730 764 IPR002885 -
Lal2g0867 1138 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 528 562 IPR002885 -
Lal2g0867 1138 Gene3D Tetratricopeptide repeat domain 689 789 IPR011990 GO:0005515
Lal2g0867 1138 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 831 865 IPR002885 -
Lal2g0867 1138 Pfam E+ motif 1015 1038 IPR046849 -
Lal2g0867 1138 SMART finulus 354 404 IPR011598 GO:0046983
Lal2g0867 1138 Gene3D - 350 418 IPR036638 GO:0046983
Lal2g0867 1138 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 348 398 IPR011598 GO:0046983
Lal2g0867 1138 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 465 1131 - -
Lal2g0867 1138 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 699 729 IPR002885 -
Lal2g0867 1138 MobiDBLite consensus disorder prediction 98 137 - -
Lal2g0867 1138 Pfam DYW family of nucleic acid deaminases 1046 1138 IPR032867 GO:0008270
Lal2g0867 1138 TIGRFAM PPR: pentatricopeptide repeat domain 704 733 IPR002885 -
Lal2g0867 1138 TIGRFAM PPR: pentatricopeptide repeat domain 530 563 IPR002885 -
Lal2g0867 1138 TIGRFAM PPR: pentatricopeptide repeat domain 732 766 IPR002885 -
Lal2g0867 1138 TIGRFAM PPR: pentatricopeptide repeat domain 631 664 IPR002885 -
Lal2g0867 1138 TIGRFAM PPR: pentatricopeptide repeat domain 833 866 IPR002885 -
Lal2g0867 1138 Pfam E motif 948 1010 IPR046848 -
Lal2g0867 1138 Pfam Helix-loop-helix DNA-binding domain 354 398 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0867 Lal-Chr2 5611088 5617544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0867 486 983 Glycoside Hydrolase AT3G49170 27.148 6.42e-48 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal2g0867 DYW_deaminase 1.1e-42 CL0109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0867 - - gmx:100799205 1106.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0867 2 5611088 5617544 Lal9g0698 9 4817562 4818796 LSH