Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0856 ATGTTGTTTTCTGATTTTCCGAGAAAATCAAGAAGCAAAAGAGAAAAGACATCATCATTGAATAATTTCAATGTTATGGAAAGAGAAAGAGAAAGAGAATTTGATAGAAGTTACATAAAGAAAGGTCCATGGAGTGTTGAAGAAGATGAAGTGCTGTTAAGTCATGTGAACAAGTATGGTCCAAGGGATTGGAGCTCCATTCGAACCAAAGCATTGTTGCATCGAACCGGAAAGTCTTGTCGCCTTCGATGGGTTAATAAGCTTAGACCAAATTTGAAGTCTGGCTGTAAGTTTTCAATAGAGGAGGAGATGTTGGTGATAGAATTGCAGGCAGAGTTTGGGAACAAATGGGCCAAAATTGCTACATATTTGGAAGGGAGAACTGACAATGATGTGAAAAACTTCTGGAGCAGTAGGAGGAAAAGGTTGGAGAGGATGTTGAAGAAGCCATCACCATCTAAGCCTGAGAAAAGCAAGGGAAAATCTCCTCTTTATCATGTACAAGTGGAAGAGGTTCCTGCATGTAGTTCCAATCAGGTGGAGGAAAGGCCATGTTTCACGTACAATTCTTACCCTGCTTCCTATATTGATAAGACCAAGGAGATCAAAATGGTTCACCTACCAGATTTGACAAAGCCAAACTACCAAAACCACTATTTGGATAGTGATCTCAATGCAATGGAGGTTAAGGACACCCCATTTGATATGGTACCAGCAACATCGTTTGCATCTTCATCTGGGTACAACTTTCCACAACTCCCTGAACCACAAATGGACTATCCATTATTCCCAGGGTGCCATGACCTTGCTCCAGTGCCTTTTGACCCCAACTTTATTGACATCTTTGAGCTGAAAAGTTGTCCAGAAAGTGTATGCAGTCAGAAGCTTGTGACCAGGTTGCCAACTCTTGGAATAGAGGGAAGTTGTCAAAATACAATTCCAAGTGGCTTCTTTGAGGAATTCCCAACTGAGATGTTGGAATGCTTTGAGCATCTTCCAACCTCATCAGAACAAAAAACTGTTTATTTTTAA 1032 0.407 MLFSDFPRKSRSKREKTSSLNNFNVMEREREREFDRSYIKKGPWSVEEDEVLLSHVNKYGPRDWSSIRTKALLHRTGKSCRLRWVNKLRPNLKSGCKFSIEEEMLVIELQAEFGNKWAKIATYLEGRTDNDVKNFWSSRRKRLERMLKKPSPSKPEKSKGKSPLYHVQVEEVPACSSNQVEERPCFTYNSYPASYIDKTKEIKMVHLPDLTKPNYQNHYLDSDLNAMEVKDTPFDMVPATSFASSSGYNFPQLPEPQMDYPLFPGCHDLAPVPFDPNFIDIFELKSCPESVCSQKLVTRLPTLGIEGSCQNTIPSGFFEEFPTEMLECFEHLPTSSEQKTVYF 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0856 343 MobiDBLite consensus disorder prediction 1 20 - -
Lal2g0856 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 36 92 IPR017930 -
Lal2g0856 343 CDD SANT 43 88 IPR001005 -
Lal2g0856 343 CDD SANT 97 136 IPR001005 -
Lal2g0856 343 Gene3D - 96 164 - -
Lal2g0856 343 Gene3D - 40 93 - -
Lal2g0856 343 SMART sant 94 142 IPR001005 -
Lal2g0856 343 SMART sant 40 90 IPR001005 -
Lal2g0856 343 PANTHER TRANSCRIPTION FACTOR DUO1 31 338 - -
Lal2g0856 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 93 144 IPR017930 -
Lal2g0856 343 ProSiteProfiles Myb-like domain profile. 36 88 IPR001005 -
Lal2g0856 343 Pfam Myb-like DNA-binding domain 44 103 - -
Lal2g0856 343 ProSiteProfiles Myb-like domain profile. 97 140 IPR001005 -
Lal2g0856 343 PANTHER MYB TRANSCRIPTION FACTOR 31 338 - -
Lal2g0856 343 SUPERFAMILY Homeodomain-like 39 136 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0856 Lal-Chr2 5568898 5570644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0856 30 147 MYB Transcription Factor Family AT3G60460 77.119 2.73e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal2g0856 Myb_DNA-bind_6 1.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0856 K09422 - gmx:100793689 386.341