Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0828 ATGTTGGACTCCGTTCTTTTAGCACTTTTCCTCCCTTGTTTCGGCATGAGTGCTTTGTTCATAGTCTACACGTGCTTTCTCTGGTACAACACAATTCACCAAGCCGTTCATTCCGGTCCACCGGCTAAGCCCGTCAATGACAAGGGTCTTTCTATTTCGGAGCTGGATAAACTTCCGAAGGTCACCGGCAAAGAACTTGTCATGGGGTCTGAATGCGCTGTGTGCCTCGATGAGATCGAAAACGAGCAACCGGCTCGGCTTGTTCCCGGTTGCAACCATGGTTTCCATCTTCAATGCGCTGACACGTGGCTGTCTAAGAACCGTGTATGTCCCGTTTGTAGAACTAAACTGGATTCTGAGTTTTTCGCTTCCTCTACCAATCAAAATCCATGTTGA 396 0.4823 MLDSVLLALFLPCFGMSALFIVYTCFLWYNTIHQAVHSGPPAKPVNDKGLSISELDKLPKVTGKELVMGSECAVCLDEIENEQPARLVPGCNHGFHLQCADTWLSKNRVCPVCRTKLDSEFFASSTNQNPC 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0828 131 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 120 IPR013083 -
Lal2g0828 131 SMART ring_2 72 113 IPR001841 -
Lal2g0828 131 Pfam Ring finger domain 71 114 IPR001841 -
Lal2g0828 131 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL23 1 131 - -
Lal2g0828 131 SUPERFAMILY RING/U-box 55 119 - -
Lal2g0828 131 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 131 - -
Lal2g0828 131 ProSiteProfiles Zinc finger RING-type profile. 72 114 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0828 Lal-Chr2 5358059 5358454 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0828 1 131 C3H Transcription Factor Family AT5G42200 50.735 3.62e-45 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0828 K19037 - gmx:100811160 204.142