Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0778 ATGCCTTCTCTTCCTCTTTCCAACGACGCCGTTTCCAACGACAAGAAACTTAAGAAGGAGAAGAAGATAAAGAACACCGGTAATGTTGAGAACCTGAACGACACCGTTTCAGATAGCAACAAGAAGAAGAGTGGCTCCAAGGAGATCAAGAAGAAGCGGAAGAAGGTTTCATCATCTTCTTCAGAAGATAATGATGATGATGATGAGAAGAGTGAGACTAGTTCTGATGTTGTTGAGGGTTTGAAAACGAAGGATAAGAAGAAGAAGAATAAGAAAGCGAAGGTGGAGATGGAAGAGGAAGAAGAAGCTGAGGTTGAGGTTGAGGTTGAAGTTGTGAATCCGAATGCGGTTTCCAATTTTAGGATATCGGAACCGTTGAAGGCGAAGTTGAAGGAGAAGGGGATTGAAGCGTTGTTCCCGATTCAAGCTATGACCTTCAATATTATTCTTGATGGCGACGATTTGGTTGGTCGTGCTCGCACTGGTCAGGGTAAAACTTTGGCTTTTGTGTTGCCTATATTGGAGTCTTTAACAAATGGTCCAGCAAAAGCATCAAGAAAGTTGGGCTACGGGAGGTCTCCAAGTGTCGTTGTGCTTCTACCTACTAGGGAATTGGCTAAACAGGTGCATGCTGATTTTGAGGTTTATGGTGGGTCATTGGGATTGGTTTCTTGCTGTTTATATGGTGGAGCTCCATATCAGACTCAAGAGATGAAGCTCAAGAGGGGTGTTGATATTGTTATTGGCACACCTGGTCGCATAAAGACTATTAGTGGATTGAAGAGTAATGCTGATTTTGTACAGGACCATATAGAGAGGGGAAATATTGACCTCAGCCTACTAAGGTTCCGTGTCCTTGATGAGGCTGATGAGATGCTGAGAATGGGTTTTGTTGAAGATGTTGAACTCATTCTAGGCAAGGTAGAAGATGTTAACAAAGTTCAGACACTTCTTTTCAGTGCTACTTTACCAGTTTGGGTTAAGCAGATTTCTACAAGATTTTTGAAACGTGATAAAAAAACTGCTGATCTTGTCGGGAATGAGAAAATGAAGGCTAGCAACAATGTTAGGCATATTGTTCTTCCATGTAATAGTTCTGCTAGGTCCCAGCTCATCCCTGACATTATTCGCTGTTATAGCAGCGGAGGCCGGACAATTATTTTTACTGAGAAAAAGGAGTCTGCTTCTGAGCTTGCAGGGGTCTTGCAAGGAGCAAGACCTCTCCATGGTGACATACAACAGTCACAACGTGAGGTGACTTTGGCAGGTTTTAGGTCTGGAAAATTCTTGACATTGGTGGCCACAAATGTGGCAGCTAGGGGTCTGGATATCAATGATGTTCAGTTAATTATCCAGTGTGAACCTCCTCGGGATGTAGAAGCATATATCCATCGTTCTGGACGTACAGGAAGAGCTGGTAATACTGGAGTTGCTGTAATGCTTTATGATCCCAGAAAGTCAAGTGTGTCTAGAATAGAGAGAGAATCAGGCGTCAAATTTGAGCATGTGTCAGCTCCTCAGTCTGATGATATTGCCAAAGCTGTTGGTGGGGAAGCTGCTGAATTGATTTTGCAAGTGTCTGATAGTGTGGTTCCTGCATTCACGTCTGCTGCTGAGGGGCTTTTGAATAACAGTGGTTTATCAGCTGTTGAATTACTTGCAAAAGCTCTTGCCAAGGCTGTTGGTTTTACTGAGATAGTGAAAAGATCACTCCTGACTTCCATGGAAAATTATGTCACATTACAGCTTGAAATTGGGAAACCTATTTTCACCCCATCTTTTGCATTTGGAATCCTGAGGAGATTCGTTCCGGAGGAGAAGGTTAACACAGTGCAGGGTCTTACTATCACTGCGGATGGAAATGGTGCTGTTTTTGATGTACCGGCGAAAGAATTAGATGCATTTATTACTGGTCAACAAAATGCTGCTAATGTAAGTCTGGAGGTGGTGAAAGCATTGCCACAGTTACAAGAAAGAGACCAACCAAAAATGAGCAGATATGGCGGTGGAAGTCGTGGGTTTCATGGTGGAAGTGGTGGAAATAGATTTGGTGGAAGAGGAGGTGGCAGGAATAGTAGATTTTCAGGTGGTTATGGTGGTGGGAGAGGCGGAAAGAGATGGTAA 2124 0.4331 MPSLPLSNDAVSNDKKLKKEKKIKNTGNVENLNDTVSDSNKKKSGSKEIKKKRKKVSSSSSEDNDDDDEKSETSSDVVEGLKTKDKKKKNKKAKVEMEEEEEAEVEVEVEVVNPNAVSNFRISEPLKAKLKEKGIEALFPIQAMTFNIILDGDDLVGRARTGQGKTLAFVLPILESLTNGPAKASRKLGYGRSPSVVVLLPTRELAKQVHADFEVYGGSLGLVSCCLYGGAPYQTQEMKLKRGVDIVIGTPGRIKTISGLKSNADFVQDHIERGNIDLSLLRFRVLDEADEMLRMGFVEDVELILGKVEDVNKVQTLLFSATLPVWVKQISTRFLKRDKKTADLVGNEKMKASNNVRHIVLPCNSSARSQLIPDIIRCYSSGGRTIIFTEKKESASELAGVLQGARPLHGDIQQSQREVTLAGFRSGKFLTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSRIERESGVKFEHVSAPQSDDIAKAVGGEAAELILQVSDSVVPAFTSAAEGLLNNSGLSAVELLAKALAKAVGFTEIVKRSLLTSMENYVTLQLEIGKPIFTPSFAFGILRRFVPEEKVNTVQGLTITADGNGAVFDVPAKELDAFITGQQNAANVSLEVVKALPQLQERDQPKMSRYGGGSRGFHGGSGGNRFGGRGGGRNSRFSGGYGGGRGGKRW 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0778 707 Pfam GUCT (NUC152) domain 562 657 IPR012562 GO:0003723|GO:0004386|GO:0005524
Lal2g0778 707 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 370 512 IPR001650 -
Lal2g0778 707 Pfam Helicase conserved C-terminal domain 375 473 IPR001650 -
Lal2g0778 707 SMART helicmild6 396 473 IPR001650 -
Lal2g0778 707 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 7 28 689 - -
Lal2g0778 707 MobiDBLite consensus disorder prediction 1 101 - -
Lal2g0778 707 MobiDBLite consensus disorder prediction 661 707 - -
Lal2g0778 707 CDD SF2_C_DEAD 356 482 - -
Lal2g0778 707 Gene3D - 60 341 IPR027417 -
Lal2g0778 707 CDD DEADc 126 337 - -
Lal2g0778 707 MobiDBLite consensus disorder prediction 12 27 - -
Lal2g0778 707 Gene3D - 351 576 IPR027417 -
Lal2g0778 707 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 194 486 IPR027417 -
Lal2g0778 707 SMART ultradead3 134 359 IPR014001 -
Lal2g0778 707 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 28 689 - -
Lal2g0778 707 SUPERFAMILY RNA-binding domain, RBD 567 649 IPR035979 GO:0003676
Lal2g0778 707 Pfam DEAD/DEAH box helicase 139 329 IPR011545 GO:0003676|GO:0005524
Lal2g0778 707 Coils Coil 81 110 - -
Lal2g0778 707 CDD GUCT_RH7_like 569 654 - -
Lal2g0778 707 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 285 293 IPR000629 -
Lal2g0778 707 Gene3D - 577 652 - -
Lal2g0778 707 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 146 341 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0778 Lal-Chr2 4982638 4987628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0778 152 479 Eukaryotic Initiation Factors Gene Family AT1G72730 29.217 1.03e-34 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0778 K16911 - jre:108988915 880.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0778 2 4982638 4987628 Lal2g0778 2 4982638 4987628 ECH