Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0727 ATGAAGAGGTCTCATGCATCTTCTTGTTCTTCATCTTCTTCTTCTTCTGTTGAGTTTGAAACTCCCATTGAAAAAAGAAGGCCTAAGCATCCAAGAAGGATTGTTAAGTCACAAGAATGTAATAAGCAGAAACAAACCACTAGCAATAGAAGCTCCATTTATAGAGGAGTTACAAGACATAGATGGACTGGAAGATTTGAAGCTCATCTATGGGATAAGAGTTCTTGGAACAACATTCAGAAAAAGAAGGGTAGACAAGGGGCATATGATTCTGAAGAATCTGCAGCACATACTTATGATCTCGCAGCTCTTAAGTATTGGGGAAAGGATGCAACTTTAAATTTCCCGATTGAAACTTATAGCAAGGACCTTGAGGAAATGAAGAAGGTCACAAAAGAAGAATTCTTGGCTAATTTAAGGCGTCAAAGCAGTGGTTTTTCTAGAGGTGTTTCTAAGTACCGTGGGGTAGCAAGGCATCACCATAATGGCCGTTGGGAAGCTCGCATTGGGAGAGTGTGTGGTAACAAGTACCTTTACTTAGGGACATATAAAACTCAAGAGGAAGCAGCTATAGCATATGACATGGCAGCAATAGAGCACAGAGGAATAAATGCAGTGACCAATTTTGACATAAGCAACTATATTAACAAAATAAAGATGAAAAATGAGCCATCTCAAGAAACTGAAACAACACCTAGTTCAATTGATTCTGAAGAAGCAGAAGCTGAAGTTGAACAGAAAAACATAGCACCACCTCCACTAGAAAATGTAGACAAGGAGCTACAACAAGTTGAAAACACCATTGTTGTTCTAAGTGAAGAAACCCCACCATTTATTTCTATGGACCATGTTTTTGAGAAAGACATGCCATGGAACTTCATGGACACTAGTTTAACTCAGTTTCAAGACCTAGACTTGGGTTTGAGCAAAGAAGATAATTTATCATGCATGTTTAATGGTGGAGGGTTTGAGGATGATATTGATTTTTTGTTCAACACAGAACCTAGTGATGGTGATTTTAACTTCAATGCAGTTTTGGATAGTATAATTGAGTGTGGAGATATTAATGGTGCTGCAGGAACAATAGTGGATAATAACAATCAGAAAATGTTATCCTCAGCTTCTTATTCACCATCAACATCTACAACAACTACAGTTTCATGTTACTATTCTCTATGA 1179 0.3774 MKRSHASSCSSSSSSSVEFETPIEKRRPKHPRRIVKSQECNKQKQTTSNRSSIYRGVTRHRWTGRFEAHLWDKSSWNNIQKKKGRQGAYDSEESAAHTYDLAALKYWGKDATLNFPIETYSKDLEEMKKVTKEEFLANLRRQSSGFSRGVSKYRGVARHHHNGRWEARIGRVCGNKYLYLGTYKTQEEAAIAYDMAAIEHRGINAVTNFDISNYINKIKMKNEPSQETETTPSSIDSEEAEAEVEQKNIAPPPLENVDKELQQVENTIVVLSEETPPFISMDHVFEKDMPWNFMDTSLTQFQDLDLGLSKEDNLSCMFNGGGFEDDIDFLFNTEPSDGDFNFNAVLDSIIECGDINGAAGTIVDNNNQKMLSSASYSPSTSTTTTVSCYYSL 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0727 392 Coils Coil 254 274 - -
Lal2g0727 392 CDD AP2 151 212 IPR001471 GO:0003700|GO:0006355
Lal2g0727 392 SUPERFAMILY DNA-binding domain 151 212 IPR016177 GO:0003677
Lal2g0727 392 CDD AP2 52 117 IPR001471 GO:0003700|GO:0006355
Lal2g0727 392 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR WRI1 1 336 - -
Lal2g0727 392 MobiDBLite consensus disorder prediction 40 54 - -
Lal2g0727 392 SUPERFAMILY DNA-binding domain 52 118 IPR016177 GO:0003677
Lal2g0727 392 MobiDBLite consensus disorder prediction 1 19 - -
Lal2g0727 392 SMART rav1_2 53 122 IPR001471 GO:0003700|GO:0006355
Lal2g0727 392 SMART rav1_2 152 216 IPR001471 GO:0003700|GO:0006355
Lal2g0727 392 ProSiteProfiles AP2/ERF domain profile. 53 116 IPR001471 GO:0003700|GO:0006355
Lal2g0727 392 MobiDBLite consensus disorder prediction 222 252 - -
Lal2g0727 392 Gene3D AP2/ERF domain 53 118 IPR036955 GO:0003700|GO:0006355
Lal2g0727 392 Gene3D AP2/ERF domain 151 212 IPR036955 GO:0003700|GO:0006355
Lal2g0727 392 Pfam AP2 domain 53 108 IPR001471 GO:0003700|GO:0006355
Lal2g0727 392 Pfam AP2 domain 151 200 IPR001471 GO:0003700|GO:0006355
Lal2g0727 392 ProSiteProfiles AP2/ERF domain profile. 152 210 IPR001471 GO:0003700|GO:0006355
Lal2g0727 392 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 336 - -
Lal2g0727 392 MobiDBLite consensus disorder prediction 1 54 - -
Lal2g0727 392 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Lal2g0727 392 PRINTS Ethylene responsive element binding protein signature 98 118 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0727 Lal-Chr2 4563950 4568166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0727 23 233 AP2-EREBP Transcription Factor Family AT5G57390 58.605 3.07e-81 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lal2g0727 AP2 2.3e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0727 - - gmx:100527432 482.256