Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0684 ATGGCTGTTGAGGCTCGCCATCTAAATCTCTTTTCTTCTCAACTCATACCAAACAGAGAAATCATGATGAATCATCCTATGGACGCAAGCATGAACCACTACCACACTAACCACTCCTCGGTGCTTCCGCTATCTGGAACCACCACAACCACCGTGTCGGAGACACTTTTCAACCCGGCGCTACCGTACAATTCCTTAATCGCCGATTCGTTTCCTCCTCAGAAACCAATAACCGCTATGAAATCTGACGTCAGCACCCTCAACAGCAATGTCCATGTATCAAGAAAACGCTCTATAGACTCCATCAATTACGCTCCTATCTCTTATAATAAGAATCGTGCTACTAATTTCTCGTTTCTCGGTGAAGACATGTCCCTACAAATCCATCACCAACAACTCGACCTCGATAACCTCGTTTCACAACACATGGAGAAGGTGAGAATAGAATTGGAAGAGAAGAGGAAGAGAGAAGCGAGGACATTGATGAATGCGATCGAAGTTGGAATAACAAAGAGACTGAAATCAAAAGATGAAGAGATAGAGAATTTAGAGAAATTGAACTTCGCTCTGCAAGAAAGGGTGAAGTCTCTGTGCATGGAAAACCAGTTATGGCGAGATTTGGCACAAACAAACGAGGCAACCGCAAATGCTCTACGAACAAATCTAATGCAAGTGCTATCACAGGCAAGGGAAAATCCCGGAGAATACGGCGGGGCCACGGTGGAAGCGGCGGAGTCTTGCTGTGGAAGCAATGATGAAAACGAAGGGTGGCGCATGATAGCAGGGGGAGCGCAGGATAAGGAAGAAGTGATCGCGAGTACGAGGAGAGTAATGAATAATGAGAATGGGAGATTGTGCAGAAACTGTGGGAAAGAGGAATCGTGCGTACTTATTTTGCCTTGTAGGCACTTGTGCCTATGTACTGTTTGTGGCTCTACCCTTCACACTTGTCCTATTTGTAATTCCTTCAAAAATGCTAGTCTCCATGTTAACCTCACCTAA 1002 0.4521 MAVEARHLNLFSSQLIPNREIMMNHPMDASMNHYHTNHSSVLPLSGTTTTTVSETLFNPALPYNSLIADSFPPQKPITAMKSDVSTLNSNVHVSRKRSIDSINYAPISYNKNRATNFSFLGEDMSLQIHHQQLDLDNLVSQHMEKVRIELEEKRKREARTLMNAIEVGITKRLKSKDEEIENLEKLNFALQERVKSLCMENQLWRDLAQTNEATANALRTNLMQVLSQARENPGEYGGATVEAAESCCGSNDENEGWRMIAGGAQDKEEVIASTRRVMNNENGRLCRNCGKEESCVLILPCRHLCLCTVCGSTLHTCPICNSFKNASLHVNLT 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0684 333 Coils Coil 173 200 - -
Lal2g0684 333 Pfam Zinc finger, C3HC4 type (RING finger) 284 322 - -
Lal2g0684 333 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 2-RELATED 1 332 - -
Lal2g0684 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 331 IPR013083 -
Lal2g0684 333 ProSiteProfiles Zinc finger RING-type profile. 286 321 IPR001841 -
Lal2g0684 333 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 332 IPR017066 -
Lal2g0684 333 PIRSF SBP1_RNase_bind 1 333 IPR017066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0684 Lal-Chr2 4170374 4171868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0684 279 322 Miscellaneous Gene Families AT4G39050 36.364 1.13e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0684 K19042 - qsu:112024867 330.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0633 1 4087419 4088829 Lal2g0684 2 4170374 4171868 LSH
Lal2g0684 2 4170374 4171868 Lal9g0594 9 4000268 4001459 LSH
Lal1g1559 1 17947758 17950246 Lal2g0684 2 4170374 4171868 PCT
Lal2g0684 2 4170374 4171868 Lal1g1559 1 17947758 17950246 PCT