Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0659 ATGGCTGAGGTTGCTGAGATTTCTAACGATGCTGTAGCTCCCGCTTCAACAAAGTTGGAGGACTCTGAACCAAAGCCTGATGAATCTGAAATCAATGTGCAAAATTTACCTGACATGTTGAAAAAGTTGAATCCTTTGGCTAAGGAGTTTTTTCCTTCATCTCATTCTCAACATGGTCATGCTCATCAGAACTATAGTCAGTTCATACTCAACAATTTTGTGGCCACCAACATGCCCTTAGTTCATGGTCGGAGGGGAAGGGCTGCTTTTAATCTTGGCCGTGGAGGGAGAAGGATGGGTGTTAGATTACCTAAGACTCAGAGGGAAAACAGCGTTAGAAGAACAGTATATGTTTCTGACATTGATCAGCATATAACTGAGGAGCGGCTTGCTGCCTTGTTCAGCTCTTGTGGACAAGTGATTGACTGCCGAATTTGTGGTGATCCTCGTTCAGTTCTTCGCTTTGCATTTGTGGAGTTCACCAATGAGTGTAACCCATATCATGCATTTTTTGATGGAATTTGTGTCATCCCAGATGGTGCATGGGAAGCTTTAAGCCTTGATGGTACGGTGCTTGGATTCTCTCCAGTCCGGGTCCTTCCCTCAAAAACTGCTATCCTTCCTGTGAATCCTACATTCCTCCCTAGGTCAGCTGATGAACGTGAAATGTGTACAAGGACTGTCTACTGCACAAACATTGATAAGAGGCTTTCTCAGGCTGAAGTGAAGCTGTTTTTTGAATCATCTTGTGGGGAGGTCACTCGCTTGAGGCTTTTAGGAGATCATCAGCATTCAACTCGAATTGCTTTCGTGGAGTTTGCAATGGCTCAGAGTGCCATTATGGCACTGAGTTGCAGTGGGATGCTGTTGGGAACCCAGCCAGTCAGGGTAAGCCCCTCAAAGACTCCTGTTAGGCCAAGGCTCATTCGTCCTACAGGGCAGAACTGA 948 0.4578 MAEVAEISNDAVAPASTKLEDSEPKPDESEINVQNLPDMLKKLNPLAKEFFPSSHSQHGHAHQNYSQFILNNFVATNMPLVHGRRGRAAFNLGRGGRRMGVRLPKTQRENSVRRTVYVSDIDQHITEERLAALFSSCGQVIDCRICGDPRSVLRFAFVEFTNECNPYHAFFDGICVIPDGAWEALSLDGTVLGFSPVRVLPSKTAILPVNPTFLPRSADEREMCTRTVYCTNIDKRLSQAEVKLFFESSCGEVTRLRLLGDHQHSTRIAFVEFAMAQSAIMALSCSGMLLGTQPVRVSPSKTPVRPRLIRPTGQN 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0659 315 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 312 - -
Lal2g0659 315 SUPERFAMILY RNA-binding domain, RBD 216 307 IPR035979 GO:0003676
Lal2g0659 315 Pfam Ataxin-2 C-terminal region 41 55 IPR009818 -
Lal2g0659 315 MobiDBLite consensus disorder prediction 1 30 - -
Lal2g0659 315 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 228 294 IPR000504 GO:0003723
Lal2g0659 315 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 163 IPR000504 GO:0003723
Lal2g0659 315 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 226 302 IPR000504 GO:0003723
Lal2g0659 315 SUPERFAMILY RNA-binding domain, RBD 92 163 IPR035979 GO:0003676
Lal2g0659 315 Gene3D - 214 307 IPR012677 -
Lal2g0659 315 Gene3D - 94 205 IPR012677 -
Lal2g0659 315 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 9 1 312 - -
Lal2g0659 315 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 204 IPR000504 GO:0003723
Lal2g0659 315 SMART rrm1_1 227 298 IPR000504 GO:0003723
Lal2g0659 315 SMART rrm1_1 115 179 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0659 Lal-Chr2 3972745 3977071 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0659 111 283 Eukaryotic Initiation Factors Gene Family AT1G34140 25.143 9.66e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0659 - - gmx:100779109 379.793