Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal2g0618 | ATGGCGAAAACAAGTCCAGATAGAAAAGACGTGGATTCCTACACCATCGAAGGCACTAACAAGATCGTAAGAGTTGGAGATTGTGTTTTGATGAGGCCTTTGGATACGACGAAGCCACCGTACGTGGCGCGCGTGGAGAAGATCGATGAAGACAATAGGAGCAACGTTAATGTGCGCGTGAGGTTGTTTTATAGGCCTGAGGAGTCAAAAGGAGGTAGGATGTTGTTCCATGGAGCAAAAGAGCTTTTTTTGTCTGACCGTTATGATGTTCAGAGTGCTCACACTATTGAGGGAAAGTGTATTGTTCACTCTTTTAAGAACTACACTAAGCTTGAGAATGTAGCTGCTGAGGATTACTATTGTAGATTTGATTATAAGGCTGCAACAGGTGCTTTCATTCCGGAATGTGTTGTTGTGTATTGCAAATGTGAGATGCCTTATAACCCAGATGATCTCATGCAGCAATGTGAGGAGTGCAAGGATTGGTATCATCCTGTGTGCATGGGCATGACCATTGAAGAAGCAAAGAAACTAGAACATTTTCTATGTTCCAAATGTTCCTCTTCTGCATCATCAGGAGCTGGTGGCAAGGTGGAACCCGAGCGTCGAAAGAGAGGACCGTGA | 624 | 0.4439 | MAKTSPDRKDVDSYTIEGTNKIVRVGDCVLMRPLDTTKPPYVARVEKIDEDNRSNVNVRVRLFYRPEESKGGRMLFHGAKELFLSDRYDVQSAHTIEGKCIVHSFKNYTKLENVAAEDYYCRFDYKAATGAFIPECVVVYCKCEMPYNPDDLMQQCEECKDWYHPVCMGMTIEEAKKLEHFLCSKCSSSASSGAGGKVEPERRKRGP | 207 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal2g0618 | 207 | Pfam | PHD-finger | 140 | 188 | IPR019787 | - | |
| Lal2g0618 | 207 | SMART | BAH_4 | 21 | 134 | IPR001025 | GO:0003682 | |
| Lal2g0618 | 207 | PANTHER | OS08G0421900 PROTEIN | 1 | 190 | - | - | |
| Lal2g0618 | 207 | Pfam | BAH domain | 23 | 132 | IPR001025 | GO:0003682 | |
| Lal2g0618 | 207 | ProSiteProfiles | Zinc finger PHD-type profile. | 138 | 189 | IPR019787 | - | |
| Lal2g0618 | 207 | Gene3D | - | 2 | 132 | IPR043151 | - | |
| Lal2g0618 | 207 | ProSiteProfiles | BAH domain profile. | 21 | 136 | IPR001025 | GO:0003682 | |
| Lal2g0618 | 207 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 133 | 200 | IPR013083 | - | |
| Lal2g0618 | 207 | PANTHER | CHROMATIN REMODELING PROTEIN EBS | 1 | 190 | - | - | |
| Lal2g0618 | 207 | SMART | PHD_3 | 140 | 187 | IPR001965 | - | |
| Lal2g0618 | 207 | MobiDBLite | consensus disorder prediction | 187 | 207 | - | - | |
| Lal2g0618 | 207 | SUPERFAMILY | FYVE/PHD zinc finger | 134 | 190 | IPR011011 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal2g0618 | Lal-Chr2 | 3666833 | 3669890 | Dispersed/Tandem |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | PHD | Lal2g0618 | BAH | 1.9e-21 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal2g0618 | K25868 | - | gmx:100800806 | 348.977 |