Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0617 ATGGCGAAAACAAGGCCAGGTAGAAAAGACGTGGATTCCTACACCATCAAAGGCACTAACAAGATCGTAAGAGTTGAAGATTGTGTTTTGATGCGGCCTTTGGACACAACGAAGCCACCGTACGTGGCGCGCGTGGAGAAGATCGATGAAGACAATAGGGGCAACGTTAATGTGCGCGTGAGGTGGTATTATAGGCCTGAAGAATCAATAGGAGGTAGGAGGCAGTTCCATGGAGCAAAAGAGCTTTTTTTGTCTGACCATTATGATGTTCAGAGTGCTCACACTATTGAGGGAAAGTGTATTGTTCACTCTTTCAAGAACTACACTAAGCTTGAGAATGTAGCTGCTGAGGATTACTATTGTAGATTTGAGTATAAGGCTGCAACAGGTGCTTTCATTCCTGATCGTGTTGCTGTGTATTGCAAATGTGAGATGCCTTATAACCCAGATGATCTCATGGTTCAATGTGAGGGGTGCAAGGATTGGTATCATCCTGTGTGCATGGGCATGACCATTGAAGAAGCAAAGAAACTAGAACATTTTCTATGTTCCGAATGTTCGTCTTCTGATGATTTAAAAAGACCCCAAGTTACATTCTCTGCATCACCAGGAGCTGATGGCAAGGTGGAACCCAAACGTCGAAAGAGAGGACCGTGA 657 0.4444 MAKTRPGRKDVDSYTIKGTNKIVRVEDCVLMRPLDTTKPPYVARVEKIDEDNRGNVNVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCIVHSFKNYTKLENVAAEDYYCRFEYKAATGAFIPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPVCMGMTIEEAKKLEHFLCSECSSSDDLKRPQVTFSASPGADGKVEPKRRKRGP 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0617 218 PANTHER BNAC03G64850D PROTEIN 3 213 IPR045205 GO:0006325|GO:0035064
Lal2g0617 218 Pfam BAH domain 23 135 IPR001025 GO:0003682
Lal2g0617 218 Pfam PHD-finger 140 188 IPR019787 -
Lal2g0617 218 Gene3D - 2 132 IPR043151 -
Lal2g0617 218 PANTHER OS08G0421900 PROTEIN 3 213 - -
Lal2g0617 218 MobiDBLite consensus disorder prediction 188 218 - -
Lal2g0617 218 ProSitePatterns Zinc finger PHD-type signature. 141 186 IPR019786 -
Lal2g0617 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 200 IPR013083 -
Lal2g0617 218 CDD BAH_BAHCC1 22 156 - -
Lal2g0617 218 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682
Lal2g0617 218 SMART BAH_4 21 136 IPR001025 GO:0003682
Lal2g0617 218 SMART PHD_3 140 187 IPR001965 -
Lal2g0617 218 ProSiteProfiles Zinc finger PHD-type profile. 138 189 IPR019787 -
Lal2g0617 218 SUPERFAMILY FYVE/PHD zinc finger 133 190 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0617 Lal-Chr2 3658031 3661587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0617 41 132 Core DNA Replication Machinery Family AT4G14700 30.108 1.79e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal2g0617 BAH 1.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0617 K25868 - gmx:100800806 424.476