Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0588 ATGGAAGCCATGAGTATTGAGAGGAAGAGAGCATTGGTTGACAAGGTGAAAAAGGATAACATAGTTGAAAAGGAAATGAAAAATGAAGTAGAGGAGGAGTATGAAAGTAGTGGTGTTGGTCTTATAGGAGAAGAGAAGAAGAAAGGAATTGATGGGAGCAAAGGATCATCAAGTGGGGGTGGAGGGGTTTCTCCACCTTCATGTCAGGCAGAGAGGTGTGGGGCTGATCTGACTGATGCAAAGAAATACCACCACCGCCATAAGGTGTGTGACTTTCATTCCAAGGCACCTGTTGTGGTGGTTGCAGGCCTGAGGCAGAAGTTTTGTCAGCAATGTAGCAGGTTCCATGACCTGGCTGAGTTTGAAGAAGCTAAAAGAAGCTGCCGCAGACGCTTGGCTGGACATAACGAATGGCGCCGGAAAAGCAACTCTGAGAGCTGCAGCCACAGCAGAGGTCATCACCCTAAGGAAAGTCAGTGCAGGCTTGCTGATGAGAGGGGTCTTATTCAAATCAATATGGCAGGGAATTCTGGCTACAAATCTTTTCATATCAGATGA 558 0.4677 MEAMSIERKRALVDKVKKDNIVEKEMKNEVEEEYESSGVGLIGEEKKKGIDGSKGSSSGGGGVSPPSCQAERCGADLTDAKKYHHRHKVCDFHSKAPVVVVAGLRQKFCQQCSRFHDLAEFEEAKRSCRRRLAGHNEWRRKSNSESCSHSRGHHPKESQCRLADERGLIQINMAGNSGYKSFHIR 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0588 185 MobiDBLite consensus disorder prediction 139 159 - -
Lal2g0588 185 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 28 158 IPR044817 GO:0003677
Lal2g0588 185 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 28 158 - -
Lal2g0588 185 MobiDBLite consensus disorder prediction 33 68 - -
Lal2g0588 185 MobiDBLite consensus disorder prediction 33 52 - -
Lal2g0588 185 Pfam SBP domain 68 141 IPR004333 GO:0003677
Lal2g0588 185 SUPERFAMILY SBT domain 66 146 IPR036893 GO:0003677|GO:0005634
Lal2g0588 185 Gene3D - 58 129 IPR036893 GO:0003677|GO:0005634
Lal2g0588 185 ProSiteProfiles Zinc finger SBP-type profile. 65 142 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0588 Lal-Chr2 3530057 3530816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0588 1 185 SBP-box Gene Family AT3G15270 43.548 2.80e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lal2g0588 SBP 1.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0588 - - aprc:113864686 238.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0588 2 3530057 3530816 Lal11g0198 11 1407145 1409370 ECH
Lal2g0588 2 3530057 3530816 Lal2g0588 2 3530057 3530816 ECH