Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0576 ATGGAATCATGCCTTGACTCTAATGGAGGAGTCTCACCAAGTCAACAGTTGAAATTCACTTCAGCCGAGACAAAAGTTTGTAGTAATGACGATGGTTGCTTTGATTGCAATATCTGCTTGGAGTCGGCGCATGAACCTGTGGTCACTCTCTGTGGCCACCTGTACTGCTGGCCATGCATATACAAGTGGATTCATGTCCAAAGCTCATCTGTTGAACCAGATCAGCAGCAGACATGTCCAGTTTGTAAAGCAGAGATCTCTCATGCTTCATTAGTCCCTCTTTATGGCCGCGGAACATCTAACTCAGAATCTGATGGAGCCAATAAACTCCAGATGGGTCGGGGGATACCCCATAGGCCACCTCCTTACAACTTGAATGCTATGTTAGCTTCTACTCGTTCGTCATTGAATTCACATCCTGCTCAGCAACTTCATCCAAGTTATTTCCAGTCACAATCGCGGCCAGTTCATTATCAGCAATACTTTCCTCACATGTATGGAGGTTATGGTGCCAATGGACTACCTTATCTCGGAGGAGCTGCTATGGCGAGTTTCTTCAATCCAATGATTGGTATGTTTGGGGATATGTTCATGACAAGGACTTTCGGGGTCTCAGATGCAAATTTGTTTTCATACCATAATGGAAGTGGCAGTCCTAGTAGGATAAGAAGGGAAGAGATGCAAATTGACAAGTCTCTGAACAGGGTCTCTATCTTTCTTCTCTGTTGCATCATTTTGTGTCTCCTCTTATTCTGA 756 0.4444 MESCLDSNGGVSPSQQLKFTSAETKVCSNDDGCFDCNICLESAHEPVVTLCGHLYCWPCIYKWIHVQSSSVEPDQQQTCPVCKAEISHASLVPLYGRGTSNSESDGANKLQMGRGIPHRPPPYNLNAMLASTRSSLNSHPAQQLHPSYFQSQSRPVHYQQYFPHMYGGYGANGLPYLGGAAMASFFNPMIGMFGDMFMTRTFGVSDANLFSYHNGSGSPSRIRREEMQIDKSLNRVSIFLLCCIILCLLLF 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0576 251 Pfam Zinc finger, C3HC4 type (RING finger) 36 82 IPR018957 GO:0046872
Lal2g0576 251 SUPERFAMILY RING/U-box 31 95 - -
Lal2g0576 251 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3-LIKE 6 251 - -
Lal2g0576 251 CDD RING-HC_AtRMA_like 34 84 - -
Lal2g0576 251 SMART ring_2 36 82 IPR001841 -
Lal2g0576 251 ProSitePatterns Zinc finger RING-type signature. 51 60 IPR017907 -
Lal2g0576 251 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 6 251 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lal2g0576 251 ProSiteProfiles Zinc finger RING-type profile. 36 83 IPR001841 -
Lal2g0576 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 154 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0576 Lal-Chr2 3469737 3472104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0576 8 237 C3H Transcription Factor Family AT4G27470 46.352 1.83e-58 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0576 K10666 - gmx:100817526 334.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0576 2 3469737 3472104 Lal2g0576 2 3469737 3472104 ECH