Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0574 ATGAGGCATCTTATGATTTATTCAAGTTTTCTTTGGTATATTTTCTTTGCTCTCAGTGCATTTAGAATCCACGTACAAGCTAACGATAATTGGCTTAACGCTCATGCAACATTCTATGGGGCCAATCTAAGTCCCACCAGCCTCGGGGGAGCTTGTGGGTATGATGATACCTTCCATGCTGGGTTTGGGGTGAACACTGCGGCAGTGAGCACCATGCTTTTCAGAGGTGGTGAGGTTTGTGGTGCTTGCTACCAAGTGATGTGTGACTATAGGTTAGACCCAAAATGGTGCCTTAGAAGAAGCACTGTCACTGTAACTGCCACTAACTTTTGCCCTCCAAACAACCATGGAGGGTGGTGTGACCCTCCTCACCATCACTTTGATATGTCTATGCCTGCTTTCTTTCGCATTGCACGACAAGGCAATGAAGGCATTGTTCCAGTCCTTTATAAAAGGGTGGGATGCAAAAGAAGAGGGGGAGTAAGGTTCACGTTGAAGGGGCAATCAAATTTCAACATGGTGATGATAACCAACGTTGGTGGGAGTGGAGAAGTGAAAGGAGTGTGGATCAGAGGAACAAGAAGTGGAGCATGGTTACCAATGCACAGAAACTGGGGTGCTAATTGGCAAAGCAATGCAGATTTCAGAAACCAAAGGCTTTCATTCAAGATCACATTGGTTGATGGAAAAACACTCATTTTTCTCAACGTGGTTCCTTCTTCTTGGAGATTTGGACAGACTTTTGCATCCAGGAATCAGTTCTTTTAG 768 0.4479 MRHLMIYSSFLWYIFFALSAFRIHVQANDNWLNAHATFYGANLSPTSLGGACGYDDTFHAGFGVNTAAVSTMLFRGGEVCGACYQVMCDYRLDPKWCLRRSTVTVTATNFCPPNNHGGWCDPPHHHFDMSMPAFFRIARQGNEGIVPVLYKRVGCKRRGGVRFTLKGQSNFNMVMITNVGGSGEVKGVWIRGTRSGAWLPMHRNWGANWQSNADFRNQRLSFKITLVDGKTLIFLNVVPSSWRFGQTFASRNQFF 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0574 255 SUPERFAMILY Barwin-like endoglucanases 15 178 IPR036908 -
Lal2g0574 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 250 IPR007117 -
Lal2g0574 255 PANTHER EXPANSIN-A12 8 254 - -
Lal2g0574 255 PANTHER EXPANSIN-A15 8 254 IPR002963 GO:0009664
Lal2g0574 255 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Lal2g0574 255 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Lal2g0574 255 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Lal2g0574 255 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Lal2g0574 255 PRINTS Expansin signature 159 171 IPR002963 GO:0009664
Lal2g0574 255 PRINTS Expansin signature 171 192 IPR002963 GO:0009664
Lal2g0574 255 PRINTS Expansin signature 207 228 IPR002963 GO:0009664
Lal2g0574 255 PRINTS Expansin signature 236 252 IPR002963 GO:0009664
Lal2g0574 255 SUPERFAMILY PHL pollen allergen 157 250 IPR036749 -
Lal2g0574 255 SMART dpbb_1 66 150 IPR007112 -
Lal2g0574 255 Pfam Lytic transglycolase 66 150 IPR009009 -
Lal2g0574 255 Gene3D - 17 156 IPR036908 -
Lal2g0574 255 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Lal2g0574 255 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Lal2g0574 255 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Lal2g0574 255 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Lal2g0574 255 PRINTS Expansin/Lol pI family signature 198 212 IPR007118 GO:0005576
Lal2g0574 255 PRINTS Expansin/Lol pI family signature 236 250 IPR007118 GO:0005576
Lal2g0574 255 Pfam Expansin C-terminal domain 161 239 IPR007117 -
Lal2g0574 255 Gene3D - 160 255 IPR036749 -
Lal2g0574 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 160 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0574 Lal-Chr2 3463478 3465286 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0574 9 255 Expansin Gene Family AT3G15370 58.845 1.51e-115 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0574 - - gmx:106795376 469.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0574 2 3463478 3465286 Lal2g0574 2 3463478 3465286 ECH