Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0565 ATGTCTACATCACGGCCGTTCGATATGATAATGGATTTGAATGACTCCAAATACCTGTGGAAGATTGCGGTCAGAATAACTGACATTTGGTATGTGCAACTACCTCCCAAACCCGGACATCTGGAAATGATATTAATGGATTCTAAGGGGGACAGAATTCAAGTCTCTGTCCGAAAGGATCAGTTTAACGAATGGAGAGAACATTTGGTTGAGAGTTCAACTTATGTCATGCACAATTTTAATGTCATGCACAATGACATCCAATTTAAGGCATGTGACCATGTTTACAGAATGCAATTCACTGTCGGTACCACTCTCAAACAAAGAGAATTTCCTGATATTCCTGAATGGGAATATGATTTCAAAAAGTTTGGTGACATCCTTGACGGAAACGGTAGAAATGATTTACTAATAGATATCATTGGTGCTTTTGATAAGGTAATATTCTCCCAAACACAAGGCAATTTGAAGAAAGTTGTCTTCAGTTTGAAAGATTTTAGTGGTGATTTCATTAACTGTACTCTGTGGGAATCACATGCTACCAAATTCGAGAAACACTATAACAATCACTGTAATGTTGAACCTATGATAATTTTGTTAACTCATGCTAGAATCAAAGAAGGACAAGGTAAGTATCCACATAGCATTTCCAACTCATGGTGCGGATCAAAAATATTGATTGGTGAAGAAATTCCCAACATTGACAAGTACAAACAAAGTCTATCATGTGATACATTGAGCCATAGTAATAGCCAAATGTCACAATATTCTAACTTATCTGATGATGAGCGATTTATGTATAAAGCTGAAGTCAAGAGTATTACAGAAATTTCTGCAATTACATCTTCTGAGGAAATAACCTGTGTAACAGTTGGGACGACAGGAATGTTTGTTGTTGGCAAAACGGATGGTACTATGAAGGTTGTACTAAATGTACAAAGAAGACTGATGTATAAACTGGATATTAAAGTCATACACCAACATGGGAGTGGAAGGTTTGTTTTCTGGGATCGTCAATGTGCTGACATCATTGGTGTATCGGCATCTGACTTAAGAGATCAGATGGTTGCAGAAGGTGAAGATGATCCCAAGGCATTCCCTTTAATTCTGGATGAACTGCTTGCAAGAACAATGGCTCTAAGGGTCAAAGTGCAACCCTCATACAACCAATCTTCTGTTATCAGACTTTCTGAGGATCCAAATTTAATCAAGACTATACTTGATCAAATTGTCATATTTCAGCCAACAAATTCTGATGATATGAAAGCAAAGTCTGATATTAATGATTCCTTTCAGTTAGACTCTGTGAGTGCATCACATATTTTCTTTTACAAAATTTACACTGCAAAGTCTGTGTCTATTACTGCTGATCATGATCCAGACCTTTTACAAGTTTTAACTCCAGCCAAACGATTATCGGCTGACATTGACGTGGACCTCATACAAAGTCCACTGTATAATTCTACTCAGTTGTCATCTTCAAAGGTGGCAAAGCATATCAACATTGACTGA 1512 0.371 MSTSRPFDMIMDLNDSKYLWKIAVRITDIWYVQLPPKPGHLEMILMDSKGDRIQVSVRKDQFNEWREHLVESSTYVMHNFNVMHNDIQFKACDHVYRMQFTVGTTLKQREFPDIPEWEYDFKKFGDILDGNGRNDLLIDIIGAFDKVIFSQTQGNLKKVVFSLKDFSGDFINCTLWESHATKFEKHYNNHCNVEPMIILLTHARIKEGQGKYPHSISNSWCGSKILIGEEIPNIDKYKQSLSCDTLSHSNSQMSQYSNLSDDERFMYKAEVKSITEISAITSSEEITCVTVGTTGMFVVGKTDGTMKVVLNVQRRLMYKLDIKVIHQHGSGRFVFWDRQCADIIGVSASDLRDQMVAEGEDDPKAFPLILDELLARTMALRVKVQPSYNQSSVIRLSEDPNLIKTILDQIVIFQPTNSDDMKAKSDINDSFQLDSVSASHIFFYKIYTAKSVSITADHDPDLLQVLTPAKRLSADIDVDLIQSPLYNSTQLSSSKVAKHINID 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0565 503 SUPERFAMILY Nucleic acid-binding proteins 6 108 IPR012340 -
Lal2g0565 503 Gene3D - 5 108 IPR012340 -
Lal2g0565 503 Gene3D - 242 408 IPR012340 -
Lal2g0565 503 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 28 351 - -
Lal2g0565 503 CDD RPA1_DBD_B_like 157 241 - -
Lal2g0565 503 CDD RPA1_DBD_A_like 21 105 - -
Lal2g0565 503 Gene3D - 117 241 IPR012340 -
Lal2g0565 503 Pfam Domain of unknown function DUF223 42 134 IPR003871 -
Lal2g0565 503 SUPERFAMILY Nucleic acid-binding proteins 119 246 IPR012340 -
Lal2g0565 503 PANTHER REPLICATION FACTOR A 1, RFA1 28 351 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0565 Lal-Chr2 3407559 3409962 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0565 10 239 Core DNA Replication Machinery Family AT5G45400 24.793 1.00e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0565 - - lang:109343677 654.44