Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0554 ATGACCACCACAACAGACAGCTCACATGCTTCACACATGCAATACTACACCACCACCACCACTGATGATGACCAAGACATTGACGACGAAGAAGACATTATCCAAAGCCACCTACACCAACAAAACCAACAACTTAACATTATTCATCACAACAACCATAAAAGACAAGACAACAAAGAGATTGCCACAACCAGCGGCTCCTCCAGGCGCCGAGGCTGGTTTCTGGGTCGGGTTCTAGACCCGAGAGATAAATGGGTCCAAGAATGGAACAGGGTTTTCCTTCTTGTATGCGGAGCAGGTTTATTCGTGGACCCACTTTTCTTATACGTGCTCTCTCTCAGCGATACATGCATGTGTCTCTTCGTTGATGGATGGTTCGCCCTCACTATAACGGTGCTCCGTTGCATGACGGACACCTTGCACGTCTGGAACATGTGGCTGCAGCTTAAGATGGATCAGAGATCCTTTGGTTTAGGTGGCGCCACCGAGGCTCGAGGCGGCGCCGCTGGATTCAGAGATATAAGCCCTCGTTCAGTTGCTCTTGGTTATCTCAAGGGGAGGAGAGGCTTCTTTCTTGACCTCTTTGTCATCCTTCCTGTACCTCAGGTTGTGCTTTGGGTAGGAATCCCGTGGCTGTTGAAGAAAGGGTCAATAACGTTGGTGATGACAGTGTTGTTAATTATGTTTCTGTTCCAATACCTTCCCAAAATTTATCACGCTGTTTGCCATCTTCGACGCATGCAAAACCTCTCTGGCTACATTTTTGGAACCGTTTGGTGGGGTATCGCTCTTAACATGATCGTCTACTTTGTCGCTTCCCATGCAGCAGGGGCATGTTGGTACTTGCTGGGGATGCAAAGAGCATCTCAGTGTCTGACAGAGCAGTGTGGTAAAACAAACGATTGTAGCATGAAAGTGTTGTCATGCAAAAAAACAATATATTATGGGAGCCATAGCTTAGGTATGGAGAGAGCAAGGTTGGCATGGGCAGAAAACAGGGAAGCAAGGTTTACATGCTTGGATGGCCCTGATAACTACACCTATGGAGCTTATAGATGGACTGTTCAACTTGTCACTAATGATAGCCGATTGGAAAAGATACTTTTCCCTATCTTCTGGGGCCTCATGACTCTCAGCACTTTCGGAAATATAGAGAGTACAACGGAGTGGCTAGAAGTAGTTTTCAACATCATTGTGTTGACTAGTGGCCTTCTTCTTGTCACTATGTTGATCGGAAACATAAAGGTTTTTTTGCATGCAACAACATCGAAGAAGCAAGCAATGCAATTGAAGATGAGGAATATTGAGTGGTGGATGAGGAAACGGCGTTTGCCACAAGGGTATAGGCAACGCGTGCGTAACTATGAAAGACAACGTTGGGCTGCAATGCGTGGTGTTGATGAATTTGAAATGACCAGAAATCTCCCTGAGGGTCTAAGAAGAGACATTAAATACCATCTTTGTTTGGATTTAGTGAGACAGGTGCCACTATTTCAGCATATGGATGACTTAGTCCTAGAGAACATTTGTGATCGAGTAAAATCTCTCATATTCACCAAGGGAGAAACGATAGCTAAAGAGGGAGACCCAGTTCAAAGAATGTTATTTGTAGTAAGGGGACACCTTCAGAGTAGCCAAGTGTTAAGGGATGGTGTGAAAAGTTGCTGCATGTTAGGTCCAGGAAACTTCAGTGGGGATGAGCTTCTTTCTTGGTGTTTAAGGAGACCCTTTATAGAACGGCTTCCACCATCTTCATCCACACTCATTACACTAGAAACCACAGAAGCATTTGGGCTTGAAGCAAATGATGTGAAATATGTAACACAACATTTCAGGTATACATTTGTGAAGGAAAAGGTTAAGAGAAGTGCAAGATATTACTCTCCAGGTTGGAGAACTTGGGCTTCTGTGGCAATTCAATTAGCATGGAGGAGGTATAAGCATAGGTTAGCTTTGACCTCATTGTCTTTTATTAGGCCTAGGAGGCCTCTCTCACGTTCATCTTCTTTGGGAGAAGATAGGCTTCGGCTTTATACGGCTTTGTTAACCTCACCAAAGCCTAATAAGGATGATTTTGATTTTTGA 2085 0.4456 MTTTTDSSHASHMQYYTTTTTDDDQDIDDEEDIIQSHLHQQNQQLNIIHHNNHKRQDNKEIATTSGSSRRRGWFLGRVLDPRDKWVQEWNRVFLLVCGAGLFVDPLFLYVLSLSDTCMCLFVDGWFALTITVLRCMTDTLHVWNMWLQLKMDQRSFGLGGATEARGGAAGFRDISPRSVALGYLKGRRGFFLDLFVILPVPQVVLWVGIPWLLKKGSITLVMTVLLIMFLFQYLPKIYHAVCHLRRMQNLSGYIFGTVWWGIALNMIVYFVASHAAGACWYLLGMQRASQCLTEQCGKTNDCSMKVLSCKKTIYYGSHSLGMERARLAWAENREARFTCLDGPDNYTYGAYRWTVQLVTNDSRLEKILFPIFWGLMTLSTFGNIESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRRLPQGYRQRVRNYERQRWAAMRGVDEFEMTRNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETIAKEGDPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEANDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWASVAIQLAWRRYKHRLALTSLSFIRPRRPLSRSSSLGEDRLRLYTALLTSPKPNKDDFDF 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0554 694 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 13 691 - -
Lal2g0554 694 ProSiteProfiles cAMP/cGMP binding motif profile. 497 576 IPR000595 -
Lal2g0554 694 Gene3D Jelly Rolls 495 613 IPR014710 -
Lal2g0554 694 CDD CAP_ED 497 603 IPR000595 -
Lal2g0554 694 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 13 691 - -
Lal2g0554 694 SUPERFAMILY Voltage-gated potassium channels 80 418 - -
Lal2g0554 694 Pfam Ion transport protein 89 414 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lal2g0554 694 Gene3D Helix hairpin bin 422 488 - -
Lal2g0554 694 SUPERFAMILY cAMP-binding domain-like 423 611 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0554 Lal-Chr2 3340349 3348661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0554 65 693 Ion Channels AT5G54250 78.730 0.0 1014
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0554 K05391 - gmx:100796761 1098.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0554 2 3340349 3348661 Lal2g0554 2 3340349 3348661 ECH