Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0540 ATGGCGATGAGGGCAGCAGTGGCGGCGGCGCCCCGCGGTTTCAGGCGATTTTTCTGCACAAACACAGCCTCTTCTCCTTTCCCATTCGTTCCTCCGCCGGCTGCAGGTGCCACTTCCGCTAGACAGATGGCGGATCCCAACACCAACCTCTTTGTCTCTGGGCTTAGCAAACGTACTACCACAGAAAGGCTACGGGAAGAATTTGCAAAGTTTGGTGAAGTTGTTCATGCTAGGGTGGTAACCGATAGAGTGTCAGGTTACTCTAAGGGGTTTGGTTTTGTGAAATATGCTACTATTGAAGAGGCTGCAAAGGGCATTGAAGGCATGGATGGCAAGTTTTTGGATGGTTGGGTCATATTTGCGGAGTACGCAAGACCAAGACCACCGCCAGGACAACCTATGCAGAATCCAACTCCTTATTATGGCGGACAGTGA 435 0.5126 MAMRAAVAAAPRGFRRFFCTNTASSPFPFVPPPAAGATSARQMADPNTNLFVSGLSKRTTTERLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEAAKGIEGMDGKFLDGWVIFAEYARPRPPPGQPMQNPTPYYGGQ 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0540 144 MobiDBLite consensus disorder prediction 125 144 - -
Lal2g0540 144 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL-LIKE 1 142 - -
Lal2g0540 144 SUPERFAMILY RNA-binding domain, RBD 28 142 IPR035979 GO:0003676
Lal2g0540 144 Gene3D - 31 135 IPR012677 -
Lal2g0540 144 SMART rrm1_1 49 122 IPR000504 GO:0003723
Lal2g0540 144 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 48 126 IPR000504 GO:0003723
Lal2g0540 144 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 50 116 IPR000504 GO:0003723
Lal2g0540 144 PANTHER TRANSFORMER-2-RELATED 1 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0540 Lal-Chr2 3250956 3253394 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0540 48 128 Eukaryotic Initiation Factors Gene Family AT1G49760 33.333 1.13e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0540 - - gmx:100789351 213.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0545 1 3509347 3511586 Lal2g0540 2 3250956 3253394 LSH