Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0480 ATGAGTAGTGTGGGTGCAGAACAACACAAGTTTCAACCCTCCCACCAACTTTTGTCCTTGAAGAAATCTCTTAGGGACATTGACATCCCACCAAGGAAGCTCCTCACTCGCCGTGCCGCCGCCACATACGATGGCGCCGCCGATATGTTTTCAGATGAAACCTTTTTCCAAAAGTACCTCCCTCGCAACAACATGAATATAATTGTTGATGAGTCCGATGATGATGATTCTGACCCTTACTCGTCGGATCACTTCCGCATGTACGAATTCAAGGTGCGGAAGTGCACTCGCAGCCGCAGCCACGATTGGACTGACTGTCCTTTTGCTCACCCCGGCGAGAAGGCTCGTCGGCGTGATCCCAGACGTTACCATTACTCTGGTAACGTCTGTCCTGAGTATCGCCGTGGCGGCGGGTTATGCAGCCGCGGCGATACATGTGAGTTTTCTCACGGTGTTTTTGAGTGCTGGCTGCACCCTGATAGGTATAGAACTGAAGCTTGCAAGGATGGTATGAATTGTAAGAGGAAAGTGTGCTTCTTTGCACACACCCCTCGCCAAATTAGGGTTCTACCCGTAAACTCACAAACTAGTTCAAATGAAATCATGAATTCATGCAACAATAATAACAAGAATGGCAACTTCTTGAACCCTTCGAATATTAAACATTCTTGTTTGTTTTGTCATTGTAATTCTTGTGTTTCTACTTGTTCACCAACTTCTACTTTGTTTGGTATGTCTCGTTTTTTCTCTCCTCCAATGTCCCCTTCTTCTCCTGCTTCTCCTGCAAATGGGGTCTCACCTTTGTCTAGGTTTGTAGGATCTGATAAATCCCATCATGGTGTTGGTGTCCTTACCTATAAGGGCATGCTTAATGAACTCACGTGTTCCTTGGAGGGTATGAATTATGCTGAGGCTAATTCTAATTATATTTCTCCTGTTTCTTCCTCTAATTCCAATGTACAGAAGAATCTAAATTGGCTTGATGGTTCTATCAACTGTGAAGATCAACAACGTTTTGTTCTTTCTCCTTCTTCTGCTCCTTCCTCGGATTTTGGAAGCTTAAAAAACGGGAGATATTATTCAACCAACAATATTTTCAAGAATGAGGCAAAGGTTGTTGATGATGTCAATGCCCCAGATCTCGGGTGGGTGAATGAATTGCTCATGTAG 1170 0.4436 MSSVGAEQHKFQPSHQLLSLKKSLRDIDIPPRKLLTRRAAATYDGAADMFSDETFFQKYLPRNNMNIIVDESDDDDSDPYSSDHFRMYEFKVRKCTRSRSHDWTDCPFAHPGEKARRRDPRRYHYSGNVCPEYRRGGGLCSRGDTCEFSHGVFECWLHPDRYRTEACKDGMNCKRKVCFFAHTPRQIRVLPVNSQTSSNEIMNSCNNNNKNGNFLNPSNIKHSCLFCHCNSCVSTCSPTSTLFGMSRFFSPPMSPSSPASPANGVSPLSRFVGSDKSHHGVGVLTYKGMLNELTCSLEGMNYAEANSNYISPVSSSNSNVQKNLNWLDGSINCEDQQRFVLSPSSAPSSDFGSLKNGRYYSTNNIFKNEAKVVDDVNAPDLGWVNELLM 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0480 389 PANTHER UNKEMPT FAMILY MEMBER 26 388 IPR045234 -
Lal2g0480 389 Gene3D - 119 197 - -
Lal2g0480 389 ProSiteProfiles Zinc finger C3H1-type profile. 125 153 IPR000571 GO:0046872
Lal2g0480 389 SMART c3hfinal6 161 184 IPR000571 GO:0046872
Lal2g0480 389 SMART c3hfinal6 124 152 IPR000571 GO:0046872
Lal2g0480 389 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 129 151 IPR000571 GO:0046872
Lal2g0480 389 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 26 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0480 Lal-Chr2 2907001 2908170 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0480 74 190 C2H2 Transcription Factor Family AT5G12850 60.684 1.29e-49 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal2g0480 zf-CCCH 4.9e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0480 K23047 - gmx:100787049 391.734