Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0463 ATGGATCAGCAGCACTTTGACGAGGCTGTGTCCGAAATCGGTTCTTTTGAAGATAAACCATATCTTGGAAAACAGAAATCTTCCAGTGATGCCATTGCAGATTCTGATAGAAATGCCTCTGGTGGCTTTGAATGCAACATCTGCTTGGATTGTGTGGAAGATCCAGTGGTCACTCTTTGTGGTCATCTCTACTGCTGGCCCTGCATTTATAAATGGCTGAATTTCAGAAACATATCTTCCGAAGAGCAGCAGAAGCCACAATGTCCAGTATGCAAGTCAGAAGTTTCTCAATCCTCCCTTGTTCCACTGTATTGCCGCAGCCAAACCAGAAGAGTTTCTGAAGGAAATGGTTATCAAGTAGGGACAGTCATACCGCGAAGACCCTTAGCTCCAAGATCTTATAATACTACATATATGTCTCATCCTACTTCTCAAAGCTATTATCGTCATCATCCTTATCAGCCTCAGCAATTCAACTCAGTTCCAAGCAGTTACACTTCACCAATGCTTAGCCGAAGTGGTTTGCAAGATATGCCATTTGGACTCTTTGGTGGTATGATATATGCAAGGGTCTTTGGTAACCAGGTGACAGACATTTATGCATATCCTAATTCTTATAATAATTCAGGGAACAGTGACCCAAGGATAAGAAGGCATTTAATGGAAGTTGATAAATCACTGGGTAGAATCTATGTTTTCCTACTTTGCTGCCTAGTTATGTGCCTTCTCTTGTTCTGA 738 0.4173 MDQQHFDEAVSEIGSFEDKPYLGKQKSSSDAIADSDRNASGGFECNICLDCVEDPVVTLCGHLYCWPCIYKWLNFRNISSEEQQKPQCPVCKSEVSQSSLVPLYCRSQTRRVSEGNGYQVGTVIPRRPLAPRSYNTTYMSHPTSQSYYRHHPYQPQQFNSVPSSYTSPMLSRSGLQDMPFGLFGGMIYARVFGNQVTDIYAYPNSYNNSGNSDPRIRRHLMEVDKSLGRIYVFLLCCLVMCLLLF 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0463 245 ProSitePatterns Zinc finger RING-type signature. 60 69 IPR017907 -
Lal2g0463 245 SUPERFAMILY RING/U-box 35 97 - -
Lal2g0463 245 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 3 245 - -
Lal2g0463 245 SMART ring_2 45 91 IPR001841 -
Lal2g0463 245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 121 IPR013083 -
Lal2g0463 245 Pfam Zinc finger, C3HC4 type (RING finger) 45 91 IPR018957 GO:0046872
Lal2g0463 245 ProSiteProfiles Zinc finger RING-type profile. 45 92 IPR001841 -
Lal2g0463 245 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 245 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lal2g0463 245 CDD RING-HC_AtRMA_like 43 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0463 Lal-Chr2 2806944 2807681 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0463 38 245 C3H Transcription Factor Family AT4G28270 35.349 2.21e-39 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0463 K10666 - gmx:100780643 308.916