Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0441 ATGGGAAGAGTTCCTTGCTGTAATAACAAGAATAATGAGCTCAAGAAAGGTCCATGGACACCAGAGGAAGATGTTAAGCTCATCAACCACATTCAGACTCATGGACCAGGCAATTGGCGTAACCTCCCAAAGATTGCTGGTCTACAGAGGTGTGGTAAGAGTTGCCGCCTCCGGTGGACAAATTACCTAAGACCTGATATCAAGAGAGGAAGATTCTCCTTTGAAGAAGAAGAGACTATTATTCAGTTGCATAGTCTCATGGGAAACAAGTGGTCTGCTATAGCTGCAAGGTTGCCAGGAAGAACAGATAATGAAATAAAGAACTACTGGAACACACACATAAAGAAGAGGTTGCTTCGAAGTGGAATAGACCCGGTTACTCATACACCACGCCTTGACCTACTTGACATGTCCTCCATTCTAAGGACAGTGTTGGGGAACCCCTCACTTTTGGATCTGCAAACCCTAATTGGTGCCCAAGCTTTGATTAACCCTGAGTTGTTAAAGCTAGCTGCCACTGCCTCCCTTTTAGGTTCACAGAATAATACACAACAACAACTCCATTATAATGTGAATTTTCAAGCACAAAACCGAGAGTTCAATCAGTTTCAGACCTCAAATCAAACCAACAATGTAGATGGCTTCATTGGTAACATGGGAGAGTTGAGATGTTCAAGTTCTCTACAAAATTCAATTCCTACATCTTTGGATGAGAACTTTGTTTTGCAACAAAACCAAGTTGTTGATTTGATAGGGAATGATCAGACTTTGGTTCACTGTATTAATAATGCAAATGAAAAAACGGACTATGATTCTTTTATTTCTAGCCCAAACCATTTGAATAATAATTCATCATCCACGTATATGAATAGTAGCACCGCTGAGGAAGAGAGGGATAGCTATTGTAGTGAGCTGTTCAACTTCGAAATTCCTCACAATCTGGACATTAGTGACTTTTTGTAA 963 0.405 MGRVPCCNNKNNELKKGPWTPEEDVKLINHIQTHGPGNWRNLPKIAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSLMGNKWSAIAARLPGRTDNEIKNYWNTHIKKRLLRSGIDPVTHTPRLDLLDMSSILRTVLGNPSLLDLQTLIGAQALINPELLKLAATASLLGSQNNTQQQLHYNVNFQAQNREFNQFQTSNQTNNVDGFIGNMGELRCSSSLQNSIPTSLDENFVLQQNQVVDLIGNDQTLVHCINNANEKTDYDSFISSPNHLNNNSSSTYMNSSTAEEERDSYCSELFNFEIPHNLDISDFL 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0441 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Lal2g0441 320 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Lal2g0441 320 PANTHER TRANSCRIPTION FACTOR MYB41 1 314 - -
Lal2g0441 320 Gene3D - 71 118 - -
Lal2g0441 320 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 314 - -
Lal2g0441 320 SMART sant 68 116 IPR001005 -
Lal2g0441 320 SMART sant 15 65 IPR001005 -
Lal2g0441 320 CDD SANT 71 114 IPR001005 -
Lal2g0441 320 Gene3D - 15 68 - -
Lal2g0441 320 CDD SANT 18 63 IPR001005 -
Lal2g0441 320 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Lal2g0441 320 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Lal2g0441 320 Pfam Myb-like DNA-binding domain 69 113 IPR001005 -
Lal2g0441 320 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Lal2g0441 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0441 Lal-Chr2 2670367 2671728 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0441 1 320 MYB Transcription Factor Family AT4G21440 48.760 3.20e-96 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal2g0441 Myb_DNA-binding 1.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0441 K09422 - gmx:100817731 394.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0482 1 3033541 3035294 Lal2g0441 2 2670367 2671728 LSH
Lal8g0820 8 5879981 5881774 Lal2g0441 2 2670367 2671728 PCT
Lal2g0441 2 2670367 2671728 Lal8g0820 8 5879981 5881774 PCT