Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0439 ATGGTGAGACCTTGCAGTGACAAAAATGGAATAAAGAAAGGAACATGGACACCAGAGGAAGACAGAAAGCTGTTTGCATATGTTACCAAGTACGGTCACTGGAATTGGCGCCAACTTCCCAAGTTCGCTGGTCTTGCAAGGTGTGGAAAGAGCTGCAGATTAAGGTGGAAGAATTATTTAAAGCCAGGGATCAAAAGAGGGAACTACACCCAAGAAGAAGAAGAGACTATAGTTAAACTACACGCAAAGTTTGGCAACAGATGGTCTAAGATAGCCTCTCACCTACCTGGAAGATCAGACAACGAGATTAAAAATAACTGGCACGCCCGCCTCAAGAAGCACTTTCAACACAGTTCAGTGAGAAATGAAAAATCAGTTGAATCAACGCAAGAGAGGGATGTCTCGTTAGAAATCAATAACCCTTTTCACAGCATTTCTTCATCTACCCCACAGACCCATGATGCTTCTCCTTCGTCCCAGCAGACACCATAG 492 0.439 MVRPCSDKNGIKKGTWTPEEDRKLFAYVTKYGHWNWRQLPKFAGLARCGKSCRLRWKNYLKPGIKRGNYTQEEEETIVKLHAKFGNRWSKIASHLPGRSDNEIKNNWHARLKKHFQHSSVRNEKSVESTQERDVSLEINNPFHSISSSTPQTHDASPSSQQTP 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0439 163 MobiDBLite consensus disorder prediction 114 163 - -
Lal2g0439 163 CDD SANT 68 108 IPR001005 -
Lal2g0439 163 MobiDBLite consensus disorder prediction 132 163 - -
Lal2g0439 163 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Lal2g0439 163 Pfam Myb-like DNA-binding domain 66 108 IPR001005 -
Lal2g0439 163 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 153 - -
Lal2g0439 163 Gene3D - 6 65 - -
Lal2g0439 163 SMART sant 65 113 IPR001005 -
Lal2g0439 163 SMART sant 12 62 IPR001005 -
Lal2g0439 163 CDD SANT 15 60 IPR001005 -
Lal2g0439 163 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 64 IPR017930 -
Lal2g0439 163 Gene3D - 68 139 - -
Lal2g0439 163 MobiDBLite consensus disorder prediction 116 131 - -
Lal2g0439 163 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Lal2g0439 163 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Lal2g0439 163 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Lal2g0439 163 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Lal2g0439 163 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0439 Lal-Chr2 2642444 2644109 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0439 3 124 MYB Transcription Factor Family AT1G06180 63.934 1.22e-55 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal2g0439 Myb_DNA-binding 5.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0439 K09422 - gmx:106799185 225.713