Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0415 ATGTTCCAACCAAACCATCAGTTTCTTAACGCACTTGACAACATGGCTCAGAACACTTCTGAGAGCGATATACCTCGGATCGTTGAGTTCGACAGTGCTAACAGGTCTGGTAGTGAAAACCAGGAAGGTGCCTCTGGTGAAGACCAAGAGCCCAGTGCAAAGAAGAAGCGGTACCATCGTCACACTCAGCATCAGATCCAAGAAATGGAAGCGTTCTTCAAGGAGTGTCCACACCCTGATGACAAGCAAAGGAAGGAACTGAGCAGGGAGCTAGGGTTAGAGCCATTGCAGGTTAAGTTTTGGTTTCAGAACAAGCGCACTCAAATGAAGACCCAACATGAGCGTCATGAGAACACACAGCTTAGAACCGAAAATGACAAGCTTCGAGCTGAAAACATGACATATAGGGAAGCTCTTAGCAATGCCTCGTGTTCTAATTGTGGTGGACCAACTGCTCCAGGCGAGATGTCGTTTGATGAACATCACTTGAGACTTGAAAATGCTAGGCTAAGAGAAGAGATTGATCGTATTTCTGCAATTGCTGCCAAGTACGTGGGAAAGTCAGTGGTGAATTATTCAAACCTTTCCCCTTCTCTTCCTCAACGCCCACTAGAACTTGCAGCTGGTGGCGGTTTTGGTGGCCAGCCAGCTGGGATTGGTGGTGGTGATATGTATGGAGGTGGTGGAGATTTTCTAAGGTCAATTAGTGGGCCCACTGAATCTGACAAGCCAATAATAATTGAGCTTGCTGTTGCAGCTATGGAGGAGCTTATTGGGATGGCACAAATGGGTGAGCCTCTTTGGTTGACCACCCACACCCATGATGGCACTTCTGCTGTGTTAAACGAAGATGAATACATTAGGTCCTTCCCCCGGGGAATTGGCCCAAAACCTATTGGCTTCAAATGTGAAGCTTCTCGAGAAACTACTGTTGTTATCATGAATCATGTCAACCTTGTTGAGATTCTCATGGATGTGAATCAATGGTCAACAGTGTTCTCTGGTATTGTCTCAAGAGCAATGACTCTGGAAGTGTTGTCAACGGGGGTTGCAGGGAACTATAATGGTGCCTTACAAGTGATGACAGCAGAGCTACAAGTACCTTCACCTCTTGTGCCAACTCGTGAGAGTTATTTTGTAAGATATTGTAAACAACATATAGATGGGACTTGGGCAGTAGTGGACGTGTCTTTGGATAATTTGCGCCCTAGTCCTTCACCTAGATGTAGAAGAAGGCCTTCTGGATGCTTAATTCAAGAATTGCCCAATGGATACTCAAAGGTCACATGGGTGGAGCATGTGGAAGTTGATGATAGAGGTGTTCATGATCTTTACAAGCAGCTTGTTAGCACTGGAAATGCATTTGGTGCAAAACGTTGGGTTGCAACCTTAGATCGCCAATGTGAAAGGCTTGCTAGTGCCATGGCAACAAACATACCCACAATAGAAGTTGGCGTGATAACAAACCAAGAAGGGAGGAAGAGTATGATGAAACTTGCTGAGAGGATGGTTATAAGCTTTTGTGGTGGAGTGAGTGCTTCTACTACTCACACATGGACCACACTACAGACAGGGACAGGGGCTGATGATGTAAGGGTCATGACCCGAAAGAGTGTTGATGACCCAGGTAGACCTCCTGGTATTGTTCTTAGTGCTGCAACTTCTTTTTGGCTTCCTGTTCCAATGAAAAGAGTTTTTGACTTCCTCCGTGATGAGAATTCTAGAAGTGAGCTAATCATCTTCCCATCAAATTCAAATGATTTAGATTGCATATCGTTTTCAAATTGCCAAAGACAGTTGTGTGACTGGGATATTCTTTCAAATGGTGGAGCTGTCCAAGAAATGGCGCACATTGCAAATGGACAAGAAACTGGAAATTGTGTGTCTCTTCTTAGAGTGAATAGTGCCAATTCAAGCCAGAGTAACATGTTAATATTACAAGAGAGTTGCGCAGATTCAACAGGCTCTTTTGTTATCTATGCTCCAGTTGATATTGTTGCAATGAATGTTGTTCTAAATGGTGGAGACCCAGACTATGTAGCCCTTCTTCCTTCAGGATTTGCAATTCTACCAGATGGAAATGCCATTGGTGAAACTGGACCTAGTGGATCACTCTTAACTGTGGCATTTCAAATATTGGTTGATTCAGTACCAACAGCTAGGCTTTCTCTTGGTTCTGTTGCTACTGTTAATAATCTTATTGCTTGCACTGTTGAGAGAATCAAGGCTTCCTTATCTCCAGAACTTCAAGATTAA 2256 0.441 MFQPNHQFLNALDNMAQNTSESDIPRIVEFDSANRSGSENQEGASGEDQEPSAKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENDKLRAENMTYREALSNASCSNCGGPTAPGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKSVVNYSNLSPSLPQRPLELAAGGGFGGQPAGIGGGDMYGGGGDFLRSISGPTESDKPIIIELAVAAMEELIGMAQMGEPLWLTTHTHDGTSAVLNEDEYIRSFPRGIGPKPIGFKCEASRETTVVIMNHVNLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQVPSPLVPTRESYFVRYCKQHIDGTWAVVDVSLDNLRPSPSPRCRRRPSGCLIQELPNGYSKVTWVEHVEVDDRGVHDLYKQLVSTGNAFGAKRWVATLDRQCERLASAMATNIPTIEVGVITNQEGRKSMMKLAERMVISFCGGVSASTTHTWTTLQTGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPMKRVFDFLRDENSRSELIIFPSNSNDLDCISFSNCQRQLCDWDILSNGGAVQEMAHIANGQETGNCVSLLRVNSANSSQSNMLILQESCADSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGNAIGETGPSGSLLTVAFQILVDSVPTARLSLGSVATVNNLIACTVERIKASLSPELQD 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0415 751 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Lal2g0415 751 ProSiteProfiles START domain profile. 239 473 IPR002913 GO:0008289
Lal2g0415 751 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 601 747 IPR042160 -
Lal2g0415 751 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 13 581 IPR042160 -
Lal2g0415 751 MobiDBLite consensus disorder prediction 33 47 - -
Lal2g0415 751 Pfam START domain 249 470 IPR002913 GO:0008289
Lal2g0415 751 Gene3D - 281 463 IPR023393 -
Lal2g0415 751 SMART HOX_1 53 116 IPR001356 GO:0003677
Lal2g0415 751 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 13 581 - -
Lal2g0415 751 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 601 747 - -
Lal2g0415 751 SUPERFAMILY Homeodomain-like 48 116 IPR009057 -
Lal2g0415 751 CDD START_ArGLABRA2_like 243 469 - -
Lal2g0415 751 MobiDBLite consensus disorder prediction 31 64 - -
Lal2g0415 751 CDD homeodomain 55 113 IPR001356 GO:0003677
Lal2g0415 751 Coils Coil 111 138 - -
Lal2g0415 751 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Lal2g0415 751 SUPERFAMILY Bet v1-like 489 742 - -
Lal2g0415 751 Pfam Homeodomain 55 110 IPR001356 GO:0003677
Lal2g0415 751 SUPERFAMILY Bet v1-like 240 472 - -
Lal2g0415 751 SMART START_1 248 470 IPR002913 GO:0008289
Lal2g0415 751 Gene3D - 40 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0415 Lal-Chr2 2482576 2488061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0415 1 748 Homeobox Transcription Factor Family AT1G05230 73.816 0.0 1110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal2g0415 START 1.1e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0415 K09338 - gmx:100782260 1222.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0492 1 3113759 3118186 Lal2g0415 2 2482576 2488061 LSH
Lal2g0415 2 2482576 2488061 Lal9g0387 9 2559705 2566312 LSH
Lal25g0047 25 340502 347138 Lal2g0415 2 2482576 2488061 PCT
Lal2g0415 2 2482576 2488061 Lal25g0047 25 340502 347138 PCT