Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0397 ATGGAGGCCCCGGGGATGGTAGAGAAGAAGGAGATCGAGTCACATTTGACTTCAGCCGCTGCTTTTGTGGAAGGCGGAGTCCAGGATTCTTGCGACGACGCTTGCAGCATATGTCTTGAAGCCTTCTCCAATAGTGATCCTTCCTCGGTTACTAATTGCAAGCACGCATTTCATCTTCAGTGCATTCTGGAATGGTGTCAGAGAAGCTCCCAGTGCCCCATGTGTTGGCAAGCCATCAGTCTGAAAGATCCAACCAGCCAGGAATTACTCGAGGCAGTGGAGAGAGAGAGGAATTTTAGGTTAAATCCTTCTAGACATACAAGAATATTTCATCACCCAACCATGGGGGATTTTGAGTTACAACATTTGTCTGATGGCGTGGCTAGTACTAATCTTGAAGAACGTATAATCCAGCACTTAGCAGCTTCTGCTGCTGCAATGGAGCGAGAGCGTCACGTTGTTAGAAGGGAAGGTCAGAGACGCAGGCCATCAGCTCAAGGTCAGCCACAGTTTTTGGTATTTCCAACTCAGAGGAGTGATGGTAAGCTTACTCCTTCAATTACGGTTACCTCTTTACCTTCAACTCCTGCGACTGCAGCAGAATCATCACTGATAATGTCAGTTCCTTCTGTTGAAGCTGACCCAATTTCTGCCTCAGGATCTGGATTTGCTGCTAATCACCAGGGATCATCTTACAGCAACAGAATTCCTTCACTTGACATCTTTAAAAATCCATACAGGAGATCTCCTAGTCTGTCTTCTCCCAGTACTCAAGACAGAGCAAGTCCATCAGAATTCCAATCATTCCCAGAATCTCTCAAGTCTAGACTAAATGCAGTGTCAATGAGATACAAAGAGTCTATTTCCAAGAGCACAAGAGGGTGGAAAGATAGATGGTTCTCTGGTAATACTTCTATTTCTGATTTGGGATCTGAAGTCAAGAGAGAAGTTAATGCAGGAATTGCCACTATTTCACGCATGATAGAACGTCTGGAAACAAGAGATACTAATAGAACCAGCGACAATTTTACACCAAATAATATAGAGGATGGTTTAGTTCCTGGATCAAATAACCAGCATTTAACAAACACTGAAGGTGACAGTCTTTCAAGAGACAACACAAAAGCATGTTGTGCTGCAGGTTCTAGTTCAAATTAA 1158 0.4387 MEAPGMVEKKEIESHLTSAAAFVEGGVQDSCDDACSICLEAFSNSDPSSVTNCKHAFHLQCILEWCQRSSQCPMCWQAISLKDPTSQELLEAVERERNFRLNPSRHTRIFHHPTMGDFELQHLSDGVASTNLEERIIQHLAASAAAMERERHVVRREGQRRRPSAQGQPQFLVFPTQRSDGKLTPSITVTSLPSTPATAAESSLIMSVPSVEADPISASGSGFAANHQGSSYSNRIPSLDIFKNPYRRSPSLSSPSTQDRASPSEFQSFPESLKSRLNAVSMRYKESISKSTRGWKDRWFSGNTSISDLGSEVKREVNAGIATISRMIERLETRDTNRTSDNFTPNNIEDGLVPGSNNQHLTNTEGDSLSRDNTKACCAAGSSSN 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0397 385 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 5 384 - -
Lal2g0397 385 SMART ring_2 35 75 IPR001841 -
Lal2g0397 385 Pfam Ring finger domain 34 75 IPR001841 -
Lal2g0397 385 MobiDBLite consensus disorder prediction 243 269 - -
Lal2g0397 385 MobiDBLite consensus disorder prediction 247 269 - -
Lal2g0397 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 112 IPR013083 -
Lal2g0397 385 ProSiteProfiles Zinc finger RING-type profile. 35 75 IPR001841 -
Lal2g0397 385 SUPERFAMILY RING/U-box 29 83 - -
Lal2g0397 385 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 5 384 - -
Lal2g0397 385 MobiDBLite consensus disorder prediction 338 385 - -
Lal2g0397 385 MobiDBLite consensus disorder prediction 335 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0397 Lal-Chr2 2389436 2393457 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0397 32 83 C3H Transcription Factor Family AT3G02290 42.308 4.12e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0397 K19043 - gmx:100814908 505.368