Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0393 ATGTCAATGGACATGATGGCAACTGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGGTTAGTGTTCCATATAGCAGTTTGCTTACCATAGTGACGGTTAGATGTGGGCATTGTGCCAATTTGCTATCAGTTAACATGGGAACTTCACTTCAACCATTTCCTCCTCCTCAAGACTTTCATCAGAAACAGCACCTAAACATTGATGAGTCAAGCAGCAATGAGGAACTGGGATCATCTTCAAGATGTAACAAAATAATGGCATTTGAGCCTTTAGAGCATGAACAACCTAGGATTCCTCCCATTCGTCCCCCAGAAAAGAGGCAACGTGTTCCTTCTGCTTATAACCGGTTCATCAAGGAAGAAATCCAAAGGATTAAGGCCAGTAATCCAGATATCAGCCACAGAGAGGCTTTCAGCACAGCAGCCAAAAACTGGGCACATTTCCCTCATACTCACTTTGGGTTAAATCTGGATGGCAAAAACAAACAAGCAAAGTTTGACCAAGGAAGTGAAGCAACTCAAAAACCTAATGGATTATACTGA 558 0.4229 MSMDMMATERVCYVHCNFCNTILAVSVPYSSLLTIVTVRCGHCANLLSVNMGTSLQPFPPPQDFHQKQHLNIDESSSNEELGSSSRCNKIMAFEPLEHEQPRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHTHFGLNLDGKNKQAKFDQGSEATQKPNGLY 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0393 185 PANTHER PLANT-SPECIFIC TRANSCRIPTION FACTOR YABBY FAMILY PROTEIN 1 185 - -
Lal2g0393 185 SUPERFAMILY HMG-box 104 154 IPR036910 -
Lal2g0393 185 Pfam YABBY protein 7 160 IPR006780 GO:0007275
Lal2g0393 185 Gene3D High mobility group box domain 98 180 IPR036910 -
Lal2g0393 185 PANTHER PROTEIN YABBY 6-RELATED 1 185 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0393 Lal-Chr2 2372289 2377456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0393 1 185 C2C2-YABBY Transcription Factor Family AT1G08465 65.079 1.54e-79 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Lal2g0393 YABBY 3.5e-71 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0393 K25796 - gmx:100500091 273.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0393 2 2372289 2377456 Lal9g0358 9 2389972 2396127 LSH
Lal25g0060 25 433938 444313 Lal2g0393 2 2372289 2377456 PCT
Lal8g0028 8 275587 281530 Lal2g0393 2 2372289 2377456 PCT
Lal2g0393 2 2372289 2377456 Lal25g0060 25 433938 444313 PCT
Lal2g0393 2 2372289 2377456 Lal8g0028 8 275587 281530 PCT