Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0378 ATGGAGTCTCGCATGGATCAGTATGAGATCATGGAGCAGATTGGTCGAGGAGCTTTTGGTGCTGCTATTCTTGTTCATCACAAGGCCGAGAAGAAGAGATATGTGTTGAAAAAAATCAGGCTTGCAAGGCAGACTGAAAGATGCAGAAGATCTGCTCATGAAGAAATGGCTCTAATTGCTCGAATCCAGCACCCTTACATTGTTGAATTCAAGGAGGCATGGGTTGAGAAGGGTTGCTATGTCTGCATTGTCACTGGATACTGTGAAGGTGGAGACATGGCTGAATTAATGAAAAGATCAAATGGTGCTTACTTTCCTGAAGAGAAAATCTGCAAATGGTTCACTCAAATACTCTTAGCAGTGGAATACCTGCATTCAAATTATGTTTTACATCGTGACCTAAAGTGTTCCAACATCTTTCTTACCAAGGATCAGGATATTCGCTTGGGTGATTTTGGGCTGGCAAAAACTCTAAAGGCAGATGATTTGGCTTCTTCGGTAGTAGGAACTCCCAATTACATGTGTCCTGAACTGCTTGCAGACATTCCTTATGGATTTAAATCTGATATTTGGTCACTAGGGTGCTGTATATATGAGATGGCTGCTCATCGCCATGCTTTTAAAGCTTTTGATATGGCGGGATTGATAAGCAAGATAAACCGTTCCTCTATTGGCCCTTTGCCTCCATGTTACCCCCCTTCTTTGAAAATATTGATAAAGAGCATGTTGAGGAAAAGTCCTGAGCATAGACCAACAGCATCTGAGGTGTTAAAGCACCCTTATTTGCAACCTTACGTTGTTCAATATCGCCCATCTTTCAATCCTCCTCCAATATCCCGTTCTTTTGAAAAACAAATTTCTTATGTACATCGTCCTCGAAAAAATAAGGCTGAAAGTCAAAACAGTAATAGTTCAAGCAGTGACAAAGATAGTATGATGTTAAATGAGAGAAACATTGCCACAGCAGTGCCAAAATGTGGTAACAAAGGCACTGACACAGATGCGACATCAATAGATGACGATGGCTCAGAGCATCTCCTGCCTCGTGAGGAAGAAAGTAGCGCTAACAATACCAATGCAGATACCAAAGAAGCTGAACAAAAGGTGATGAAACCATCTCATAATGGACAGTGTTCTAATATTGATGCTAAGCAGCCAAAAACAATTAGGAATATAATGATGGCATTAAAAGAGGAAAATGTTAGAGAAACAACTTCTCCAATGAGAGGTAGTCGAGTAAAGGCTGGTGGTCTACCAACACAGAAAATAAATACAGAGATGCTGTCCAAATTGCCTAAGCCGATTTTTGGTTCTCCCGGTTCAAAGCCTAATTTAGAGTCACCAACTGCTGCACTTGCAAAGGCAACCCCTGATTCTGCAAAGCGAATACCGAGTTCACACCCTTCAAAGCATCAGTTACCTATGACAGAATTCACACCAAAAACTAAACCAAGACATGATTTGACTCCACCACATGCTCTTATTAAACAAATAGAAGGAGATGGAGTTCCTTCCAAGCCAAGGCTAAGAGCTCCTCCAAGCTTAATTAGACAACCTTCATTTCCTGCAAGCATGAGGTTGGTTGGGGTTGATGTTCCAAATCCTGCAAATGACACTGAAAAGCTATGTCCAAATAAAACAGCTCAGGCGCCTGAGATAATCCATTGTCCGTTGATTAATGGCAATGTACCAATTTGTAGACAGCCTCAGAAGGATTTTGCAAGAAGTTCCAAAGAAATGCAAACAGACAGCAGTAATTCTGCTTCATCTTCATTCTCTATGCAAGGATTTGAACTTTCTGATGATGCAACAACTTTTATTGACTTGATAGAACAAACAATTCCTGATCATGACAGCGAAGGCGTAGGATCAAGTCCAGAGAGCATGCCACCTGCAACCTTTTCACATTGTAAGATGGTTGAACAGGTGTCCGGAGAAACCCTTGAGGTTACCCTGAATTTTCATAATAATAATATTAGCAAAAATGAGAAAGTTAGTCCCAATTTAACTTTTGATCACCCAAAAGATGAAGATTCTAAGGTAGAAGATGGTATTCACATAAATCAGACAACTATATCTACTGCCTCCGGTTGTGGTAATAAAACTGTTGACCATCCTGCTGAAGCCACACAAAAAATCAAAGATCCTCAAGATATTAATACAGTAAGCAAGTCTGATACAGTTAGCCTGCCAAAACTAGTGTGTAAATCATTCGGTGATGACAAATTTACAGTGAGGGAGCGACTATTGATGGTGGCAGAAACTGCTCCACCGATTACTACTACTAAAATTCAAAGCCAGAAAGTTTTGCAAGAGAAAGGAACCGTATCGCAGAATCCAGCACAAGAAAAACCAGATGCTGGCCATCTTCCTACAGCCTTTGATGATGTAATCCATGTTATACGCCATAGCAGTTACCGCGTTGGGAGTGAGCAGCAGCAGCCAGTAAAGGAAACCGTGGAGAAGGGGGTTCAAAATGTAGATATTGGTAAGTTTATCAACAGTTTAAGGGATGATTTAGAAATCACAAACACGAGCTCTCCTATGACCCTTAAATCTTCAAGTTGCTCTGAAGCTGCAAGCATCAAATCAAATATCTCTGATCAATGTGAAATGAGAAATATGACCACTCCTGCTAACCTTAAATCTTCTAGTTGTTCTGATGCTTTGAGCTCGAAATCGTGTATTTCTGATCATACTGCCCTTAAGGAACAGGATATGAGTAACCTTGTTTCTTTAGTTTCAGAAACTGATTCCAGTGAGTTAAGTAAAAATAGCACTCCAGTGACACAAGCAAGGGAAATATTGGATGTCAAATCTTTCAGGCAGAGAGCAGAGGCACTTGAAGAGCTCTTAGAATTATCTGCAGATTTGTTGCAGCAAAATAGATTGGAGGAACTTCAAGTTGTTCTGAAGCCCTTTGGGAAAGATAAGGTTTCTCCAAGGGAGACAGCCATTTGGTTAGCCAAGAGTCTTAAAGGAATGTCCTTTGAGGAAAGTGGAGGACGTTCTTCATGA 3018 0.4069 MESRMDQYEIMEQIGRGAFGAAILVHHKAEKKRYVLKKIRLARQTERCRRSAHEEMALIARIQHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAELMKRSNGAYFPEEKICKWFTQILLAVEYLHSNYVLHRDLKCSNIFLTKDQDIRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCIYEMAAHRHAFKAFDMAGLISKINRSSIGPLPPCYPPSLKILIKSMLRKSPEHRPTASEVLKHPYLQPYVVQYRPSFNPPPISRSFEKQISYVHRPRKNKAESQNSNSSSSDKDSMMLNERNIATAVPKCGNKGTDTDATSIDDDGSEHLLPREEESSANNTNADTKEAEQKVMKPSHNGQCSNIDAKQPKTIRNIMMALKEENVRETTSPMRGSRVKAGGLPTQKINTEMLSKLPKPIFGSPGSKPNLESPTAALAKATPDSAKRIPSSHPSKHQLPMTEFTPKTKPRHDLTPPHALIKQIEGDGVPSKPRLRAPPSLIRQPSFPASMRLVGVDVPNPANDTEKLCPNKTAQAPEIIHCPLINGNVPICRQPQKDFARSSKEMQTDSSNSASSSFSMQGFELSDDATTFIDLIEQTIPDHDSEGVGSSPESMPPATFSHCKMVEQVSGETLEVTLNFHNNNISKNEKVSPNLTFDHPKDEDSKVEDGIHINQTTISTASGCGNKTVDHPAEATQKIKDPQDINTVSKSDTVSLPKLVCKSFGDDKFTVRERLLMVAETAPPITTTKIQSQKVLQEKGTVSQNPAQEKPDAGHLPTAFDDVIHVIRHSSYRVGSEQQQPVKETVEKGVQNVDIGKFINSLRDDLEITNTSSPMTLKSSSCSEAASIKSNISDQCEMRNMTTPANLKSSSCSDALSSKSCISDHTALKEQDMSNLVSLVSETDSSELSKNSTPVTQAREILDVKSFRQRAEALEELLELSADLLQQNRLEELQVVLKPFGKDKVSPRETAIWLAKSLKGMSFEESGGRSS 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0378 1005 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Lal2g0378 1005 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 662 988 - -
Lal2g0378 1005 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 559 - -
Lal2g0378 1005 MobiDBLite consensus disorder prediction 573 593 - -
Lal2g0378 1005 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Lal2g0378 1005 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal2g0378 1005 Gene3D Transferase(Phosphotransferase) domain 1 90 327 - -
Lal2g0378 1005 MobiDBLite consensus disorder prediction 291 381 - -
Lal2g0378 1005 CDD STKc_Nek 7 262 - -
Lal2g0378 1005 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal2g0378 1005 MobiDBLite consensus disorder prediction 437 489 - -
Lal2g0378 1005 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Lal2g0378 1005 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal2g0378 1005 SUPERFAMILY Protein kinase-like (PK-like) 4 300 IPR011009 -
Lal2g0378 1005 MobiDBLite consensus disorder prediction 334 351 - -
Lal2g0378 1005 MobiDBLite consensus disorder prediction 579 593 - -
Lal2g0378 1005 MobiDBLite consensus disorder prediction 298 314 - -
Lal2g0378 1005 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK5-LIKE 1 559 - -
Lal2g0378 1005 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK5-LIKE 662 988 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0378 Lal-Chr2 2227070 2233025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0378 14 263 MAP Kinase Kinase Kinase AT1G53570 31.373 3.57e-34 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Lal2g0378 Pkinase 1.4e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0378 K08857 - gmx:100818747 1353.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0378 2 2227070 2233025 Lal2g0378 2 2227070 2233025 ECH
Lal1g0443 1 2752140 2758545 Lal2g0378 2 2227070 2233025 LSH