Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0376 ATGTCAGGCACGACGCCACCACCAACCGCCGCATCTGACCAGATCATGCATTCCATGAAACGACAACTTCCGTTTTCATCGATGAAACCTCTTTTTGTCGCTGCCGGAGATTATCATCGCTTCGCTTCTGAGCGACGTCGAAATGTTGACCAACCACCCGAGGCCTTAGTCGTCAGGTCTCCTAAATTGAAGCGGAAGAATGAAGTGGATTTTGATGCTGATTCTGGTGATAGCATGAATCCTGGATCCACTGAAGCAGCTAATAGGCCTTTTCAGCCACCTGTATCAGGAAAGATGGGGAAGGGTAGCAAGTCCTCCAGGCTTACAAAATGCAGTAGATATGGACCTAAAACCCCAGGATCAAATATTGGTTCTCCTTCAGTCAACAATCTCACACCTGCTGGTCCATGTCGTTACGACAGCTCTTTAAGTTTGTTGACAAAGAAATTTATCAATTTGATCAAACAAGCAGAGGATGGTATTCTTGATCTGAATAATGCTGCTGACACATTGGAGGTGCAAAAGAGAAGGATATATGATATAACCAATGTTCTTGAAGGGATCGGCCTTATAGAAAAGAAGCTCAAGAACAGAATTCAATGGAAAGGACTGGATGACTCAAGACCAGGGGAGGCTGAAGATAGTTTTAGTAGCTTACAGGCAGAAGTTGAAAATCTTGCAATGGAAGAATGCCGGTTAGATGAGCAAATAAGGGAGATTCAAGAAAGACTGCGAGACCTTAGTGAAGATGAAAACAATGAGAAGTTGCTTTTTGTCACTGAGGAAGATATAAAGAATTTGCCCTGCTTCCAGAATGAAACCTTGATTGCAATTAAAGCTCCACATGGCACCACTCTAGAGGTTCCTGATCCTGATGAGGCTGTTGATTATCCCCAGAGAAGATACAGGATAGTCCTGAGAAGCACAATGGGTCCAATAGATGTTTACCTTGTTAGTCAATTTGAAGAGAAGTTTGAGGAGATTAATGGTGTTGAAGTTGCACCCAAATTTCCACCCACTCCAGAACTTAGCAAGCAACAATCAACATTGGTCACAGAGGATAGAGGGAAGGGTATAGCAGAGGATAGAGGAAAAGGAATAGAAGTGCAGGGACAAGATGAACATGGGCCTAGTTCAGATTTTACTATCGCACAGGACTTTGTGAGTGGGATAATGAAGATTGTTCCTTCAGATGTTGATAGTGATGCTGATTACTGGCTTTTATCAGATGCCGATGTTAGTATAACAGACATGTGGAGAACAGAATCTGGAGTTGAGTGGAACGAACTGGATAGTACACTTCAAGAAGATGATCGTGTAACTCATGAGTTTGCTGCTGCCCCAACTCATCCTCCAAATGCAAGTGAAGCCCCTGCAACATCTAACCGACTGGAAGTTGAAGCTTCAAAAGAATTCTAG 1419 0.4327 MSGTTPPPTAASDQIMHSMKRQLPFSSMKPLFVAAGDYHRFASERRRNVDQPPEALVVRSPKLKRKNEVDFDADSGDSMNPGSTEAANRPFQPPVSGKMGKGSKSSRLTKCSRYGPKTPGSNIGSPSVNNLTPAGPCRYDSSLSLLTKKFINLIKQAEDGILDLNNAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDDSRPGEAEDSFSSLQAEVENLAMEECRLDEQIREIQERLRDLSEDENNEKLLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGVEVAPKFPPTPELSKQQSTLVTEDRGKGIAEDRGKGIEVQGQDEHGPSSDFTIAQDFVSGIMKIVPSDVDSDADYWLLSDADVSITDMWRTESGVEWNELDSTLQEDDRVTHEFAAAPTHPPNASEAPATSNRLEVEASKEF 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0376 472 MobiDBLite consensus disorder prediction 102 129 - -
Lal2g0376 472 Pfam E2F transcription factor CC-MB domain 219 319 IPR032198 GO:0046983
Lal2g0376 472 MobiDBLite consensus disorder prediction 446 472 - -
Lal2g0376 472 Gene3D - 210 320 - -
Lal2g0376 472 Coils Coil 154 174 - -
Lal2g0376 472 PANTHER TRANSCRIPTION FACTOR E2F 16 456 IPR015633 GO:0000978|GO:0006357
Lal2g0376 472 SUPERFAMILY E2F-DP heterodimerization region 216 320 IPR037241 -
Lal2g0376 472 Pfam E2F/DP family winged-helix DNA-binding domain 140 203 IPR003316 GO:0005667|GO:0006355
Lal2g0376 472 Coils Coil 233 257 - -
Lal2g0376 472 Gene3D - 132 205 IPR036388 -
Lal2g0376 472 SMART E2F_TDP_2 138 203 IPR003316 GO:0005667|GO:0006355
Lal2g0376 472 MobiDBLite consensus disorder prediction 59 73 - -
Lal2g0376 472 CDD E2F_DD 214 320 IPR032198 GO:0046983
Lal2g0376 472 SUPERFAMILY "Winged helix" DNA-binding domain 138 201 IPR036390 -
Lal2g0376 472 MobiDBLite consensus disorder prediction 43 129 - -
Lal2g0376 472 PANTHER TRANSCRIPTION FACTOR E2FB 16 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0376 Lal-Chr2 2210635 2216853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0376 14 430 E2F-DP Transcription Factor Family AT5G22220 56.621 5.63e-148 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Lal2g0376 E2F_CC-MB 2e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0376 K06620 - gmx:100819817 689.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0376 2 2210635 2216853 Lal2g0376 2 2210635 2216853 ECH
Lal1g0441 1 2737596 2744014 Lal2g0376 2 2210635 2216853 LSH
Lal2g0376 2 2210635 2216853 Lal9g0342 9 2262478 2267731 LSH