Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0350 ATGTATCATCAAGGAAAGAACATTCATCCTTCTTCCAGAATGTCAATACCTTCTTCTGAGAGAAATATGTTCCTTAAAACAGGAAATGGTTCTTCAGATTCTGGACTTGTACTATCAACTGATGCTAAGCCTAGATTGAAATGGACACCAGATCTTCATGCTAGGTTTATAGAAGCAGTCCATCAGTTAGGTGGACCTGATAAAGCAACTCCAAAAACAGTGACAAAACTCATGGGAATTCCAGGGCTTACATTATATCATCTCAAGAGTCATCTTCAGAAGTACAGATTGAGCAAGAGTATGCATGGACAAAGCAACAACGTGGCACACAAAATAACCACAACCCCAGGTGCAGAAATGAGAGAAGGAAACTTTGAAAACAACGAAACTATGATCAATTTAGACCTTGCACCTGAAGTTAACAATGATTTACACATAAATGAGGCACTGCAGATGCAGATAGAGGTGCAGAGAAGGCTAAATGAACAACTTGAGGTACAAAGACACTTGCAGGTCCGCATAGAGTCCCAAGGAAAATACCTACAAGCAGTGCTAGAGAAAGCTCAAGAAACACTTGGTAGACAGAATTTAGGAACAGTAGGACTTGAAGCTGCAAAAGTTCAACTTTCTGAGCTTGTGTCCAAAGTATCCTCTCAGACCCTGAACACATCATTCTCAGAACTGAAGGAATTACAAGGATTTAGCCCAAATCAAACACAAACGGACTTCTACTTGGATAGTTGCCTCACATCATGTGAGGGTTCAAAAAAGGATAATCAGCAAGAAATGGGCTTAAGACCCTTCAGTGGCCATGAATTGAAGTGGTGTAATGATCAAGTGAAAAAGAACAACTATCTTACCTTATTGGGAAAGAATGTAGAAAGAAGCAGTGTTGTAGAAAGAAGTGATCCTAGCAACTTATCTATGAGCATTGGAAATGAGGAGGGAAAAGAGAATGGAAGCAGCTGCATGTATCCCGAGAGAATAGTCCTCATTGGGAATCAGTTAGATGATGAATACAGACAAAGAAACTCAATTAGGACAGAACCAGTGAAACTAGTGGCTAATGATGAGAAAGGTTCACAAGATTATAGATTGTCTACTTCATACTTTGCAGAAGCAAAACTAGACCTAAACAAACTTGAAGATAATGAGCCTGAAATAAATTGTAAACAACTGGACTTGAATGGATTCAGTTGGAGCTGA 1206 0.393 MYHQGKNIHPSSRMSIPSSERNMFLKTGNGSSDSGLVLSTDAKPRLKWTPDLHARFIEAVHQLGGPDKATPKTVTKLMGIPGLTLYHLKSHLQKYRLSKSMHGQSNNVAHKITTTPGAEMREGNFENNETMINLDLAPEVNNDLHINEALQMQIEVQRRLNEQLEVQRHLQVRIESQGKYLQAVLEKAQETLGRQNLGTVGLEAAKVQLSELVSKVSSQTLNTSFSELKELQGFSPNQTQTDFYLDSCLTSCEGSKKDNQQEMGLRPFSGHELKWCNDQVKKNNYLTLLGKNVERSSVVERSDPSNLSMSIGNEEGKENGSSCMYPERIVLIGNQLDDEYRQRNSIRTEPVKLVANDEKGSQDYRLSTSYFAEAKLDLNKLEDNEPEINCKQLDLNGFSWS 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0350 401 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 43 98 IPR006447 GO:0003677
Lal2g0350 401 Pfam MYB-CC type transfactor, LHEQLE motif 145 191 IPR025756 -
Lal2g0350 401 MobiDBLite consensus disorder prediction 8 36 - -
Lal2g0350 401 PANTHER MYB-RELATED PROTEIN 2 3 401 - -
Lal2g0350 401 Gene3D - 42 100 - -
Lal2g0350 401 Coils Coil 147 167 - -
Lal2g0350 401 MobiDBLite consensus disorder prediction 1 36 - -
Lal2g0350 401 SUPERFAMILY Homeodomain-like 42 98 IPR009057 -
Lal2g0350 401 Pfam Myb-like DNA-binding domain 45 96 IPR001005 -
Lal2g0350 401 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 3 401 IPR044848 GO:0003700
Lal2g0350 401 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 40 100 IPR017930 -
Lal2g0350 401 MobiDBLite consensus disorder prediction 299 317 - -
Lal2g0350 401 MobiDBLite consensus disorder prediction 297 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0350 Lal-Chr2 2107672 2110521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0350 76 400 G2-like Transcription Factor Family AT3G04030 45.869 6.71e-77 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lal2g0350 Myb_DNA-binding 6.9e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0350 - - gmx:100810396 504.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0350 2 2107672 2110521 Lal9g0330 9 2206433 2209255 LSH
Lal10g1306 10 19057557 19061941 Lal2g0350 2 2107672 2110521 PCT
Lal2g0350 2 2107672 2110521 Lal10g1306 10 19057557 19061941 PCT