Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0346 ATGAATTTGAGGGAATGCAATAATATTGTAGAGGACAAGAAGTTGTACCTTCATTCCCCAACTTTCATTGAATGGCTAAAACCATCTAATTCCTCTCCTTCATATCAAAATTCCACAGTGTCATCATCATCAATATCTTCTCCTTTTTCTGTGACTCAGAATGAGCTTGTCCATGAAACTATCCAATTTTTGCCCATCTTAAGTGGAAAGCTCTCAAAAGAAGACCTAAAAATGGAGGGTTTTGAGGTAAATGATGAGGAGAAGGTGGAACAAATGACTGTGGCTTTGCATATTGGATTGCCTCATAGTAATTCTACTACTGATCATGACCACCCTGATGAAAAGAAGAAGGTTTTCCATGTTAAGGAAGAAGAAGAAACCTTGATAAAAACAACCTTCCATGGCTGCTCAGAGAGAAGGTTTTGGATACCAACTCCAGCACATATACTTGTTGGGCCGATGCAGTTTGCTTGCAATATATGCAGCAAGACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGGCATGGATCCGAGTATAGGAAAGGACCAAACTCACTTAGAGGAACACGACCAGCTGAAATTCTTAGGGTACCATGTTATTGTTGTGCACAAGGTTGCAAGAATAATATTAACCACCCAAGAGCAAAACCATTGAAGGACTTTAGGACACTCCAAACCCACTACAAAAGAAAGCATGGCACAAAACCATTCACATGCAGAAAATGTGGCAAAACATTTGCTGTCAAAGGTGATTGGAGGACTCATGAGAAGAACTGTGGCAAGTTGTGGTATTGCATATGTGGTTCTGACTTCAAGCATAAGAGGTCTCTTAAGGATCACATTAGATCCTTTGGAAAGGGTCATAACCCACGTTCCAATTCTCTTGATGAAGAATTTGATTGCATTATTACTTGGTCTGATGAAGATCATGAAGTTGCTCATAACACGATCATCTAG 966 0.3975 MNLRECNNIVEDKKLYLHSPTFIEWLKPSNSSPSYQNSTVSSSSISSPFSVTQNELVHETIQFLPILSGKLSKEDLKMEGFEVNDEEKVEQMTVALHIGLPHSNSTTDHDHPDEKKKVFHVKEEEETLIKTTFHGCSERRFWIPTPAHILVGPMQFACNICSKTFNRYNNMQMHMWGHGSEYRKGPNSLRGTRPAEILRVPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFTCRKCGKTFAVKGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIRSFGKGHNPRSNSLDEEFDCIITWSDEDHEVAHNTII 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0346 321 ProSiteProfiles Zinc finger C2H2 type domain profile. 156 183 IPR013087 -
Lal2g0346 321 PANTHER ZINC FINGER PROTEIN WIP2 2 313 IPR043584 GO:0003700|GO:0010468
Lal2g0346 321 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 2 313 - -
Lal2g0346 321 Pfam Zinc finger, C2H2 type 156 175 IPR013087 -
Lal2g0346 321 Gene3D Classic Zinc Finger 236 301 - -
Lal2g0346 321 ProSitePatterns Zinc finger C2H2 type domain signature. 158 178 IPR013087 -
Lal2g0346 321 ProSiteProfiles Zinc finger C2H2 type domain profile. 240 260 IPR013087 -
Lal2g0346 321 Gene3D Classic Zinc Finger 153 178 - -
Lal2g0346 321 SUPERFAMILY beta-beta-alpha zinc fingers 140 179 IPR036236 -
Lal2g0346 321 SMART c2h2final6 203 235 IPR013087 -
Lal2g0346 321 SMART c2h2final6 240 260 IPR013087 -
Lal2g0346 321 SMART c2h2final6 156 178 IPR013087 -
Lal2g0346 321 SUPERFAMILY beta-beta-alpha zinc fingers 226 260 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0346 Lal-Chr2 2077499 2080855 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0346 8 307 C2H2 Transcription Factor Family AT1G08290 53.216 1.45e-114 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal2g0346 zf-C2H2_6 0.00026 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0346 - - gmx:100802773 463.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0346 2 2077499 2080855 Lal2g0346 2 2077499 2080855 ECH
Lal1g0425 1 2653671 2658777 Lal2g0346 2 2077499 2080855 LSH