Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0328 ATGGAACCACCAGTTGCTAGATCGAGGGGAAGGCCACGGAAGCGGAGAAGAAATGACGAAGATAAACCGGTTGCGGAATTGAAGATGCAAGTTGTGGAGACAAGGTTGATAGCATTGGTTGGGAGATTCGTGCTGAAAAAGTTCCCGAGAAACGGAGTTTTTCTCGGTAAGGTTGTGTATTATGAGTGTGGACTGTATAGGGTTCATTATGAGGATGGGGATTGTGAGGATTTAGATAGCAGTGAGGTTCGTGCAATTCTTGTTAATGATAGTGATTTCGATGCTGGTTTGACTCGAAGGAAGGTCAAATTAGAGGAATTAGTTTCACAGATTCGTGCAAAGGTCACAGATGAGAAGGATAAGGGGTCTGTTGATCATGATAAAGAGGAATCCAAGGTCGAAGCGCCTGTTTCTAGTGAATTGAACAATGATGAACAAGATGGTGAGGGTGATGGTGTCGACTCAAGAGATTCTGGTGCGAGTTTAGGGGAACAGGGTTCTGGCACTGAGTCTGAGACACTGCTTCTGCCACCACCATTGCAGTTACCGCCTTCATCGGGAACTGTCGGTGTGCCTGATCAGTACGTATCGCACCTGTTTGCCGTTTATGGATTCTTAAGATCCTTCACTACTTGCTTGTTTTTAACTCCCTTTACGTTGGATGACTTTGTTGGTGCTCTTAACTGCCAAGTTGCAAACACATTGTTTGACGCTATTCATGTTTCCCTTCTGCGCGCGTTAAAGCATCGTCTTGAAACCGTTTCATCCGAGGGATCAGAGCTTGCATCACAATGCCTTAGGTGCAATGATTGGAGCTTGCTTGATACGCTGACTTGGCCCATTTTTGCGATTCAGTATTTATTTATTAACGGATACACAAAGGGACCCGAATGGAGAGGATTTTATAATGAAATTTTTACCGGGGAGTATTATTTATTTCCTGTGAGTAGGAAACTAATTATATTGCAAATCCTTTGTGATGATGTTTTGGAATCTGAGGAGATAAAAGCTGAAATGAATATGCGCAAAGAATCGGAGGTAGGGGTGGATTATGATGCAGAAGATACCCCTCCTGTGGAAACCAGGCCAAGAAGTCATCATCAAAGATATGGCAAGACTTCTGCTCGTGAGGATAAAGAAGCAATGAAGTTTGTTTCAGTATCAAATGTTGTGAACCAACCTGGTAATTCGATTTCATATTTCAGAGATACTGAAAGCACTGAGGATGGTGATGTTGATAGAAATGGAGATGAATGTCGCCTATGCGGTATGGATGGGACCCTGCTTTGTTGTGATGGGTGCCCCTCTGCTTATCATTCGAGATGTATAGGTGTGATGAAAATGTATATACCAGAAGGGGCATGGTATTGTCCAGAGTGCAAAATTAACATGACTGGGCCAACAATTGTAAAGGGAACAACACTTAGAGGGGGTGAAATATTTGGAAAGGATTTGTATGGGCAACTCTTCGTGGGTACTTGCGACCACTTGCTGGTGCTCAATACCAATGATGACAAACCCCACCTTAAGTATTACAATCCGAATGACATTCCTAAAGTTCTCCAAGTCCTTTATGAATCAATGCAGCATAGAACAATGTATTATGGTATTTGCATGGCAGTGTTACAATACTGGAATGTTTCAGGAAGTTTCTTGCCTCTTTCTGTTTCAACCGGAACAATCTTAAACTCAGTAATTAAAGAAGAGACAGATTTCTCTACTATATCACTTCCTCCCTCGGGTGAAGTCAATCACAGTCCTGTTAATTTGGTGAATGGAGAGTACCCTCTAACCACTCCAAGTTCGAATGATGCTGATATTGCAGTGCCATCTCTTGATGCTTCATCAGTTACCACTCAGAGTCCTGCTCCTGAAAGCCTTTATAATTTTAGAAGTAAAGAGTGCCCTATTGTGGATACAAAGCTTCCTGAGGAAACTAAGATGGAGTCAATCATCTCATTTTGTTCTGTTAGCCATCAGTCTGATGTGAATTACCATCATTCTGTGGATAGTTCTATTTCAATTGATCATGCTAAGTGCTCTTTGGTGAACAGACAACACAGTAATCTGGGTCATGCAAATGTTATGGGGTTGCCTACGAATTGTTCAGTGCAAACCAAAGAAAGCACTCAAGTAGGTTTTGGAAAGTGGGAACACAATATTACTAATGGTTTTGAGTACAAGGGATTCTCTTATAAACCTCTGGCGTACATTAACTACTATATGCATGCCGATTTTGCTGCATCAGCAGCTGCTAAATTGGCTGTTCTTTCTTCAGAGGAGTCTAGGTCAGAGGGTCACGCATCAGACAATCAGAGGAAAAATACAGCTGCAATTGTTTATTTGCAAGCAAAAGCATTCTCACTAACAGCTTCACGCTTCTTTTGGCCAAGTTCTGAAAAGAAGCTTGTGGAGGTTCCAAGAGAGAGGTGTGGCTGGTGTTTGTCATGTAAATCCCATGTTTCAAGCAAGAGAGGATGCATGTTAAATCATGCTGCTCTAAGTGCCACTAAAAGTGCTATGAAATTTTTTGCTGCCTTTTCTGTTTTAAGGAGTGGAGAGGGAAATCTTCCTAGCATTGCAACATATATTATATACATAGAGGAGTGTTTACATGGTTTAATTGTTGGGCCCTTCCAAAGTGCAAGCTACAGAAAGCAATGGCGTGAGCAAGTTGAACAAGCCACAACTTATAGCGCTCTCAAGCTGCTTTTACTTGAACTTGAGGAGAATATTCGTACAATTGCTTTTTGTGGGGACTGGGTTAAGCTGATGGATGATTGTTTGGTAGAATCTTCCATAATACAAAGTGCTCCATCTTCTCTTGGAACAACACAGAAACGTGCACCAAGTGGGAGGCGTTGCAAAAAGCGATCAGCTATTGATGAAGCTAAAGTTGATGCAACCCCAGAAAGCTTTGTATGGTGGCGAGGCGGCAAATTTTCCAAATTCATATTTCAGAAAGCAGTTTTGCCATTATCCATGCTCAGAAAAGCAGCTCGCCGAGGTGGTCGGAGGAAAGTTTCTGGTATTTCCTATACTGACGGCTCTGAAGTCCCTAAAAGAAGCAGGCAACTTGTTTGGAGAGTTGCAGTTCAAATGAGTAGGAATACATCACAACTGGCACTTCAGGTAAGATTTCTAGATTCTTATCTCAGATGGAATGATCTTATTCGCCAGGAGCAGAACATCCAGGATGGGAAAGGTCAAGAGACTGAAGCTTCTACGTTCAGAAATGCAAATATATCTGATAAAAAGCTTGTAGAGGGAAAATGTTGTTATGGAGTAGTCTTTGGGAGCCAAAAACATCTTTCTTCCCGGGTGATGAAAAATGTTGTTGAAATAGAGCAAGGTTCGGATGGAAAGGAAAAATATTGGTTTTCCGAAACACGTATTCCTTTATATTTGGTAAAAGAGTATGAAGAAGCTAATGCAAAAGTGCTATCTGGTGAAGAGTGCTTGAATTTTGTGTCTCAGTTGCACAAAAGGCGGTTGAGGACTAAATGCAAGGACATATTTTTTTACCTTGCCTGCAAGAGAGACAACTTGGATACGTTCTCGTGTTCTGTATGTCATATGGGGGTTTCAATTCGGATTGCCTTCCAGTGCAATGCATGTCAAGGTTATTGTCACGAGGGCTGTTCCATAAGTTCAAAGATCTTTACCAATGAGAAAGTTGAGTACTTGACAACATGCAACCATTGTCACCATGCTAAGTTACTTGCTCTAAAAGAGACTAGTAATGAATTTCCAACTAGCCCCTTACTCTTACGAGGGCGAGAAAATGGTTCTTTGACAATTTTGAAGGGACCGATGCCTAAATATAATGATCAAGCACATAAATCTGCCAGGACAAAAGCTAGCTCTCCTGGCATGAACCAAGTTGGTTCTGTGTCAGTTTTGAGGGGACCAAGATCTAGATGTGATGATCAGGCATTGACTTCTACCAGGACAAAAGATAGTCGTCCCGGCAAGAAACAAGTTGCTTCTTATTCCAGTTCAGCAGCAAAAAGTCGACACAGGAATAGTTCTTGGGGTATTATATGGAAAAAGAAAAATAATGAAGCTGTCGAAAATTCAGCAGACGTTGATTTCAGGCTCAATAACATACTTTTGAAGGGAGGTTCTGGCATGCCTCAAATTGAACCTGTTTGTCACTTGTGTCGGAAGGCATATAGGTCTGATCTGATGTATATTTTCTGTAAGACATGCAACAATTGGTATCATGCTGAAGCTGTTGAACTTGAAGAGTCCAAAATTTTGGATGTGTCAGGCTTCAAATGTTGCAAGTGTCGCAGGATAAAATCACCTGAGTGTCCCTACTCTGATGCGAAGCCTAAGATACAAGAGGGCAAGAAGTCCAGGTCACGCCCAATGGCTTCAAAGAAAGAGCATTTTGCAGCAGATTCTGATTCTGGAACATTTTCTGATATGAAAGAATGTGAACCCGCTACACCTGTCTTTCCTGTAGATGATGATCCTCTGCTCTTTCCTCTTTCAAATGTAGAACTGATTACAGAACCTACGTTAGAAGTGGATATTGAGCAGAATATTGTCTCCGAGTTAGGACCTCGGAAATTACCAGTGAGAAGGCAAGTTAAGTGTGAGGGGGATGGCGATGTGGATGTTGAGTGGAATACTGTCTCTGGACCTCAGAAATTACCTGTGAGAAGGCAAGTTAAGCATGAGGGGGATGGTTATGATTGTTTTGGGGGTAATTCTTTGCATGCTGAGTTCTCATCACAAAATGAAACAGACAATCTGTCCAATCCTGCATGGGGGTCATCAACTCCTTTAGAATATGATACTGGTGTTTGCTTTGACAGCAATCTTATGAATGACTCTGAAAGTTTAAATTATGAATTAATGGATTTTGAACCCAATACCTGCTTCTCTCTTACGGAACTGCTGCAGCCAGATGGTAATAGTAGCCAGTTTGACGGAGTTGATGCATCTGGAGACTTGTCTGGATATGTTGAAAATTCCGGCACCCTTGTTCCTGAAGAATGTGGAGGTGTTAGTTTAGTTGAAAGTTCAAAACCTGCAATTTCCTTTGAAGATGACAACTTCTATTTTTGTTGGCAATGTTGCCAAACAGAACCAGCCCCTGATCTTTTTTGTGAGACTTGTGGGATGTTGATTCACAGCCAATGTTCAACTTGGGCCGAATCACCATCTAGGCTTGGAAATTGGAGGTGCGGTAATTGTCGAGAATGGTAA 5220 0.4178 MEPPVARSRGRPRKRRRNDEDKPVAELKMQVVETRLIALVGRFVLKKFPRNGVFLGKVVYYECGLYRVHYEDGDCEDLDSSEVRAILVNDSDFDAGLTRRKVKLEELVSQIRAKVTDEKDKGSVDHDKEESKVEAPVSSELNNDEQDGEGDGVDSRDSGASLGEQGSGTESETLLLPPPLQLPPSSGTVGVPDQYVSHLFAVYGFLRSFTTCLFLTPFTLDDFVGALNCQVANTLFDAIHVSLLRALKHRLETVSSEGSELASQCLRCNDWSLLDTLTWPIFAIQYLFINGYTKGPEWRGFYNEIFTGEYYLFPVSRKLIILQILCDDVLESEEIKAEMNMRKESEVGVDYDAEDTPPVETRPRSHHQRYGKTSAREDKEAMKFVSVSNVVNQPGNSISYFRDTESTEDGDVDRNGDECRLCGMDGTLLCCDGCPSAYHSRCIGVMKMYIPEGAWYCPECKINMTGPTIVKGTTLRGGEIFGKDLYGQLFVGTCDHLLVLNTNDDKPHLKYYNPNDIPKVLQVLYESMQHRTMYYGICMAVLQYWNVSGSFLPLSVSTGTILNSVIKEETDFSTISLPPSGEVNHSPVNLVNGEYPLTTPSSNDADIAVPSLDASSVTTQSPAPESLYNFRSKECPIVDTKLPEETKMESIISFCSVSHQSDVNYHHSVDSSISIDHAKCSLVNRQHSNLGHANVMGLPTNCSVQTKESTQVGFGKWEHNITNGFEYKGFSYKPLAYINYYMHADFAASAAAKLAVLSSEESRSEGHASDNQRKNTAAIVYLQAKAFSLTASRFFWPSSEKKLVEVPRERCGWCLSCKSHVSSKRGCMLNHAALSATKSAMKFFAAFSVLRSGEGNLPSIATYIIYIEECLHGLIVGPFQSASYRKQWREQVEQATTYSALKLLLLELEENIRTIAFCGDWVKLMDDCLVESSIIQSAPSSLGTTQKRAPSGRRCKKRSAIDEAKVDATPESFVWWRGGKFSKFIFQKAVLPLSMLRKAARRGGRRKVSGISYTDGSEVPKRSRQLVWRVAVQMSRNTSQLALQVRFLDSYLRWNDLIRQEQNIQDGKGQETEASTFRNANISDKKLVEGKCCYGVVFGSQKHLSSRVMKNVVEIEQGSDGKEKYWFSETRIPLYLVKEYEEANAKVLSGEECLNFVSQLHKRRLRTKCKDIFFYLACKRDNLDTFSCSVCHMGVSIRIAFQCNACQGYCHEGCSISSKIFTNEKVEYLTTCNHCHHAKLLALKETSNEFPTSPLLLRGRENGSLTILKGPMPKYNDQAHKSARTKASSPGMNQVGSVSVLRGPRSRCDDQALTSTRTKDSRPGKKQVASYSSSAAKSRHRNSSWGIIWKKKNNEAVENSADVDFRLNNILLKGGSGMPQIEPVCHLCRKAYRSDLMYIFCKTCNNWYHAEAVELEESKILDVSGFKCCKCRRIKSPECPYSDAKPKIQEGKKSRSRPMASKKEHFAADSDSGTFSDMKECEPATPVFPVDDDPLLFPLSNVELITEPTLEVDIEQNIVSELGPRKLPVRRQVKCEGDGDVDVEWNTVSGPQKLPVRRQVKHEGDGYDCFGGNSLHAEFSSQNETDNLSNPAWGSSTPLEYDTGVCFDSNLMNDSESLNYELMDFEPNTCFSLTELLQPDGNSSQFDGVDASGDLSGYVENSGTLVPEECGGVSLVESSKPAISFEDDNFYFCWQCCQTEPAPDLFCETCGMLIHSQCSTWAESPSRLGNWRCGNCREW 1739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0328 1739 MobiDBLite consensus disorder prediction 118 135 - -
Lal2g0328 1739 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 1297 1737 - -
Lal2g0328 1739 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 1 1297 - -
Lal2g0328 1739 SUPERFAMILY FYVE/PHD zinc finger 388 462 IPR011011 -
Lal2g0328 1739 MobiDBLite consensus disorder prediction 160 174 - -
Lal2g0328 1739 ProSitePatterns Zinc finger PHD-type signature. 419 460 IPR019786 -
Lal2g0328 1739 Pfam DDT domain 195 247 IPR018501 -
Lal2g0328 1739 SMART testlast3 193 253 IPR018501 -
Lal2g0328 1739 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 399 468 IPR013083 -
Lal2g0328 1739 SUPERFAMILY FYVE/PHD zinc finger 1381 1437 IPR011011 -
Lal2g0328 1739 PANTHER PHD FINGER FAMILY PROTEIN 1 1297 - -
Lal2g0328 1739 PANTHER PHD FINGER FAMILY PROTEIN 1297 1737 - -
Lal2g0328 1739 ProSiteProfiles DDT domain profile. 193 253 IPR018501 -
Lal2g0328 1739 CDD PHD_SF 1384 1431 - -
Lal2g0328 1739 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1374 1447 IPR013083 -
Lal2g0328 1739 MobiDBLite consensus disorder prediction 350 372 - -
Lal2g0328 1739 MobiDBLite consensus disorder prediction 1 22 - -
Lal2g0328 1739 Pfam PHD-finger 419 461 IPR019787 -
Lal2g0328 1739 MobiDBLite consensus disorder prediction 1282 1300 - -
Lal2g0328 1739 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 307 340 IPR028942 -
Lal2g0328 1739 SUPERFAMILY FYVE/PHD zinc finger 1682 1737 IPR011011 -
Lal2g0328 1739 SMART PHD_3 1384 1432 IPR001965 -
Lal2g0328 1739 SMART PHD_3 1187 1236 IPR001965 -
Lal2g0328 1739 SMART PHD_3 1692 1737 IPR001965 -
Lal2g0328 1739 SMART PHD_3 418 461 IPR001965 -
Lal2g0328 1739 MobiDBLite consensus disorder prediction 1269 1337 - -
Lal2g0328 1739 ProSiteProfiles Zinc finger PHD-type profile. 416 463 IPR019787 -
Lal2g0328 1739 MobiDBLite consensus disorder prediction 118 181 - -
Lal2g0328 1739 MobiDBLite consensus disorder prediction 1445 1470 - -
Lal2g0328 1739 MobiDBLite consensus disorder prediction 1445 1475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0328 Lal-Chr2 1985034 1994896 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0328 284 591 EF-hand Containing Proteins AT5G22760 47.771 6.86e-77 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Lal2g0328 DDT 5.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0328 - - lang:109351702 3284.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0328 2 1985034 1994896 Lal2g0328 2 1985034 1994896 ECH
Lal1g0414 1 2552939 2561754 Lal2g0328 2 1985034 1994896 LSH