Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0319 ATGGCTAAAGGTACGGATTTGGAGCAATCTGTGGCAATGTCTAGGGTCCGTACAGGTCTCAAGAGGGAGCTTGCATTCGCTTTGAAGGCTCAGTCTGAAATCAATGGTGGCTCTCTCGGTCGAACTCGGTCAGGCAAGAACCGGAATGTGATTCAGGTTCAAACCACTCCTGCAAGAAAGCGATCCAAGAAGGAAGAGAATGTGGTTGGTGATGCTATGAGCGAGGAGGAGGAGGCGAAAAGTGATGTGGTGGATCCCAAGATTGGAGAATTGATTGAAAAGAGGGAACTTGAGGTTGAGAGAGCAAGGCCAATGGGTGTTTGTGAAGAGGAACCAAAGCGTGATATTGTGCTAGAAACTGCCACTGATGATGAACCTAAACCTGGTGGTGATGAAATTGTGCACCCCATATTTAAAACCGAGGTGAAAGAAGAACCCAAGGTGGAAAAGAGGGAACTTGTTGTTTGTGGAGAGGAACCAAAGAGTGATGTCCTGGTAGAAACTGCGAGTAATGATGAACTGAAATCTGGTAATGAAGTGGGGCAGCCAATTTGTGAAAGTGGGATGGATAGAGTTGATACATCACCTTCTCCTCACATGGAAGAAAGTTTTAATAATGGGACAACCTTAGTTTTGGTTAATGACCGTAAGGTGAACAAGATGTCTGTAGAGAAGCCGGTAAGACGATTTACACGGTCAGCATTGAAGAAAACAGTGGTTGATGCAAAGGTTGCGAGTGATGAGGAAAATGCTAGTGTTAAAGCTGTTGATATTGGTGATGTAAAAAAGGAAGTTGAGGCGGAGAAGTTAATAGCTGCCTCAAGTGGAATGGAGTTGTCCAAGACTACGACCAGGAAGAAGTTACCATCAAACTTGAAGGACCTTCTGGCTGCAGGGATTCTCGAGGGACTAGCGGTGAATTATGCCTGTGGCGTGAAGGGCCAAAGGCCTGGAGAATTCGATCTTAGGGGAGTGATTAGAGGCAACGGGATTGTGTGCCATTGTGAAATTTGTAAGGGGGATGAGGTTGTCACACCCACTGTGTTTGAGCAGCATGCTGGTACTTCAAACAGAAGCCCGCCGGGATATATATATCTTGAGAATGGGAATACTCTTTGTGATATCATGACTACATGTTTGAATGTTCCTTTAGACACCATGGAGGAAGCTGTCCAAAGGGTCCTTGGAGGGTTCACTATGAAGAAATCTACCTTCTGTTTTAACTGCCAAGATGTCAATGTTGTATCAAGACTATTGTGCAATTCATGCTTGGAATTTAAGGACTGTCAACCTAGCCCACTTCAAACAAATGAGTCTAAGAATACCTGTGTTTCACAAGCCGTTCAATCCAGATCTCTGGAACCAGTTGTGAACACTAAATCATTAAACAATGGAATGAAGCACAGCACATCCCGTGATAGGAGTCATGGAAAACTAACTAGGAAGGATTTGCGCTTGCATAAGTTGGTATTTGAAGAAGATGTGTTGCCAGATGGAACTGAAGTAGCATACTATGCTCGTGGGAAGCAACTGTTGGTTGGTTATAAAAAAGGTTTTGGAATTGTTTGTAGCTGTTGCAACTCTCAGGTCAGCCCCTCCACATTTGAAGCTCATGCTGGCTGGCCATCGCGAAGGAAGCCTTACCTGAACATATATACATCTAATGGAGTCTCACTCCACGAGCTGTCCATCTCTCTATCGAAAGATCCAAGGTTTTGTATCAGAGATAATGATGACCTCTGCACTATATGTCAAGATGGAGGGGATCTTTTGTGTTGTGATGGATGCCCAAGAGCTTTTCACATAGATTGTGTTCCTCTTCCATGCATTCCCAGCGGTACCTGGTATTGTAAATATTGCATGAATATTTTCCAGAGAGAAAAATATGTGGAGCATAATGCAAATGCTCTGGCAGCTGGAAGGGTTGCAGGTGTTGACCCTTTAGAACAGATACACCAGAGGTGCATACGTATAGTAAAAGCTGGAGAGTTTGACAACGATGGATGTGTACTATGCAGAGGCCGTGATTTCAGCAAAAGCTTTGGTCCTCGTACGGTGATTATTTGTGATCAGTGTGAAAGAGAATATCATGTTGGTTGTTTGAAGGATCATAACATGCAAAACCTAGAGGCATTGCCTGAAGGGAATTGGTTCTGCTGCTCAGATTGCAATCAAATTCATACTTCTCTGCTGAATTTGATAGCTTGTGGGGAAGAAGAACTTCCCGTTTCCCTTGTAAGTTTGATTAAAAGGAAGCGTGAAGAAAAAGGTTTAGAAACTGAAGCTGGTCCTGATATAAAATGGATGGTTCTGAACTGGAAAATGGTTGCTTCTGATGAGAATAGACAGCTGCTTTCTAAGGCTGTTGCTATCTTCCATGAGCAATTTGATCCTATAGTTGATTCTGGTTCAGGCCTTGATTTCATTCCAGCAATGCTTTATGGAAGGAGCATCAATGGCCATGATTTTGGTGGAATGTACTGTGCAATGCTCACTGTCAACCAAGTGGTTGTATCTGCCGGAATATTTCGTATCTTTGGGTCAGAAGTAGCAGAGCTTCCCTTGGTGGCGACAATTGCAGATTACCAAGGACAGGGTTACTTCCAGTCCCTTTTTGCTTGCATTGAAAGGCTGCTTGGATCACTAAATGTGAGACATCTGGTCCTACCAGCTGCTGAGGAAGCTGAATCAATATGGACCAGTAAATTTGGTTTCAAAAAGCTAGGCCAAAACGAGATAAACAGTTATAAGAGACAGTATCACTTAATGGCATTTCAAGAGACCCCATTACTACAAAAGCCAGTAGTTCCTGCACTCTGA 2820 0.4358 MAKGTDLEQSVAMSRVRTGLKRELAFALKAQSEINGGSLGRTRSGKNRNVIQVQTTPARKRSKKEENVVGDAMSEEEEAKSDVVDPKIGELIEKRELEVERARPMGVCEEEPKRDIVLETATDDEPKPGGDEIVHPIFKTEVKEEPKVEKRELVVCGEEPKSDVLVETASNDELKSGNEVGQPICESGMDRVDTSPSPHMEESFNNGTTLVLVNDRKVNKMSVEKPVRRFTRSALKKTVVDAKVASDEENASVKAVDIGDVKKEVEAEKLIAASSGMELSKTTTRKKLPSNLKDLLAAGILEGLAVNYACGVKGQRPGEFDLRGVIRGNGIVCHCEICKGDEVVTPTVFEQHAGTSNRSPPGYIYLENGNTLCDIMTTCLNVPLDTMEEAVQRVLGGFTMKKSTFCFNCQDVNVVSRLLCNSCLEFKDCQPSPLQTNESKNTCVSQAVQSRSLEPVVNTKSLNNGMKHSTSRDRSHGKLTRKDLRLHKLVFEEDVLPDGTEVAYYARGKQLLVGYKKGFGIVCSCCNSQVSPSTFEAHAGWPSRRKPYLNIYTSNGVSLHELSISLSKDPRFCIRDNDDLCTICQDGGDLLCCDGCPRAFHIDCVPLPCIPSGTWYCKYCMNIFQREKYVEHNANALAAGRVAGVDPLEQIHQRCIRIVKAGEFDNDGCVLCRGRDFSKSFGPRTVIICDQCEREYHVGCLKDHNMQNLEALPEGNWFCCSDCNQIHTSLLNLIACGEEELPVSLVSLIKRKREEKGLETEAGPDIKWMVLNWKMVASDENRQLLSKAVAIFHEQFDPIVDSGSGLDFIPAMLYGRSINGHDFGGMYCAMLTVNQVVVSAGIFRIFGSEVAELPLVATIADYQGQGYFQSLFACIERLLGSLNVRHLVLPAAEEAESIWTSKFGFKKLGQNEINSYKRQYHLMAFQETPLLQKPVVPAL 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0319 939 MobiDBLite consensus disorder prediction 35 85 - -
Lal2g0319 939 Pfam PHD-finger 581 622 IPR019787 -
Lal2g0319 939 Pfam Tify domain binding domain 324 377 IPR032308 -
Lal2g0319 939 Pfam Tify domain binding domain 514 562 IPR032308 -
Lal2g0319 939 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 663 726 IPR013083 -
Lal2g0319 939 Gene3D - 765 933 - -
Lal2g0319 939 MobiDBLite consensus disorder prediction 58 85 - -
Lal2g0319 939 ProSitePatterns Zinc finger PHD-type signature. 581 620 IPR019786 -
Lal2g0319 939 ProSiteProfiles Zinc finger PHD-type profile. 578 623 IPR019787 -
Lal2g0319 939 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 822 914 IPR016181 -
Lal2g0319 939 MobiDBLite consensus disorder prediction 102 133 - -
Lal2g0319 939 PANTHER AUTOIMMUNE REGULATOR 1 934 - -
Lal2g0319 939 PANTHER AUTOIMMUNE REGULATOR 1 934 - -
Lal2g0319 939 SUPERFAMILY FYVE/PHD zinc finger 569 623 IPR011011 -
Lal2g0319 939 SMART PHD_3 668 724 IPR001965 -
Lal2g0319 939 SMART PHD_3 580 621 IPR001965 -
Lal2g0319 939 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 574 638 IPR013083 -
Lal2g0319 939 SUPERFAMILY FYVE/PHD zinc finger 664 724 IPR011011 -
Lal2g0319 939 MobiDBLite consensus disorder prediction 35 57 - -
Lal2g0319 939 CDD PHD1_AIRE 580 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0319 Lal-Chr2 1899173 1908504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0319 281 935 PHD Transcription Factor Family AT2G36720 44.766 0.0 617
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal2g0319 TDBD 2.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0319 - - lang:109351691 1729.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0319 2 1899173 1908504 Lal2g0319 2 1899173 1908504 ECH
Lal25g0209 25 1422225 1429014 Lal2g0319 2 1899173 1908504 PCT
Lal10g1215 10 18524139 18530477 Lal2g0319 2 1899173 1908504 PCT
Lal2g0319 2 1899173 1908504 Lal25g0209 25 1422225 1429014 PCT
Lal2g0319 2 1899173 1908504 Lal10g1215 10 18524139 18530477 PCT