Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0316 ATGGAGAAGGATCAAGTATTGGGAAGTGATCAGGAAGAGTTGGTGATCATGGCAAAGGGAAAACGCACCAAACGGCTAAGACTTTTGTCTCCTAATTGTGGTGGTAGTGGTGCCACTGCCACATGCACTTACGTGAGTGCTAATTCTGAGGATAGTTCCTCAACTACTACTTATGAGAGCAATGATGAAGAAGATCAAGACGTTGCTAATTGCTTGATTCTTCTCGCTCGAGGTGGTGGTGTAGGAGATTATCATCATCATCATCATAAACAACAAGATGACCATGATGGCGATGGCAATAACAAGATAGAAAAGGGTAGCAATAACAATGGTATTGGTACCCTAAAATTTTCTGAGATGGCTACTGCTACAAACGCCCCTAAAGGAGGTTTATTTATTTATGAGTGCAGAACTTGTAACCGAACCTTCCCTTCCTTTCAAGCGTTGGGTGGCCACAGGGCTAGTCATAAAAAGCTCAAGCTCATGATGCCAGAAGAAAAGAAACCGTCACCACCGCAACCACAACCGCAACCACAGATTGATAATTTTGAAGGAGGAGGCAAACCACACATCAAAACTAGCCCTTCAATCTCCTTTAAATTGGAAAGCCAGACCAATAGATCAATTTTCAATGCTAACAAGGCAAAGATTCATGAGTGTTCCATATGTGGCTCAGAATTCGCATCAGGACAAGCATTGGGTGGACACATGAGGAGGCATAGAGCCACCACAAACACTACCACTCAGGTTCTTGCAGCGGCGAAAGAGGAAGTTCAGCACCGGAGGAATATGTTAGAATTGGATCTTAACCTTCCGGCGCCAGAGGAGGACCTCCGGGAGTCCAAGTTTCAGTTTCCGGCAACCCAAAAATCTATGGTGCTGTCTGCTTCTCTGGCTTTGGTGGATTGCCATTATTAG 918 0.4477 MEKDQVLGSDQEELVIMAKGKRTKRLRLLSPNCGGSGATATCTYVSANSEDSSSTTTYESNDEEDQDVANCLILLARGGGVGDYHHHHHKQQDDHDGDGNNKIEKGSNNNGIGTLKFSEMATATNAPKGGLFIYECRTCNRTFPSFQALGGHRASHKKLKLMMPEEKKPSPPQPQPQPQIDNFEGGGKPHIKTSPSISFKLESQTNRSIFNANKAKIHECSICGSEFASGQALGGHMRRHRATTNTTTQVLAAAKEEVQHRRNMLELDLNLPAPEEDLRESKFQFPATQKSMVLSASLALVDCHY 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0316 305 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 2 305 - -
Lal2g0316 305 ProSitePatterns Zinc finger C2H2 type domain signature. 136 156 IPR013087 -
Lal2g0316 305 PANTHER ZINC FINGER PROTEIN ZAT5 2 305 - -
Lal2g0316 305 MobiDBLite consensus disorder prediction 82 102 - -
Lal2g0316 305 Pfam C2H2-type zinc finger 218 242 - -
Lal2g0316 305 Pfam C2H2-type zinc finger 134 158 - -
Lal2g0316 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 134 161 IPR013087 -
Lal2g0316 305 Gene3D Classic Zinc Finger 132 240 - -
Lal2g0316 305 SMART c2h2final6 218 240 IPR013087 -
Lal2g0316 305 SMART c2h2final6 134 156 IPR013087 -
Lal2g0316 305 ProSitePatterns Zinc finger C2H2 type domain signature. 220 240 IPR013087 -
Lal2g0316 305 MobiDBLite consensus disorder prediction 82 111 - -
Lal2g0316 305 MobiDBLite consensus disorder prediction 164 194 - -
Lal2g0316 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 218 245 IPR013087 -
Lal2g0316 305 SUPERFAMILY beta-beta-alpha zinc fingers 134 240 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0316 Lal-Chr2 1887267 1888184 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0316 1 305 C2H2 Transcription Factor Family AT2G28200 40.663 7.06e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal2g0316 zf-C2H2_6 3.2e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0316 - - aprc:113858527 258.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0316 2 1887267 1888184 Lal2g0316 2 1887267 1888184 ECH
Lal2g0316 2 1887267 1888184 Lal12g0788 12 6129885 6130991 ECH
Lal2g0316 2 1887267 1888184 Lal13g0896 13 6178285 6180093 ECH
Lal2g0316 2 1887267 1888184 Lal24g0712 24 5314441 5319520 ECH
Lal2g0316 2 1887267 1888184 Lal9g0297 9 1909193 1910110 ECH
Lal20g0117 20 767694 768548 Lal2g0316 2 1887267 1888184 ECH
Lal1g1797 1 20297015 20297863 Lal2g0316 2 1887267 1888184 ECH
Lal13g0896 13 6178285 6180093 Lal2g0316 2 1887267 1888184 ECH
Lal1g0404 1 2487392 2488330 Lal2g0316 2 1887267 1888184 LSH
Lal2g0316 2 1887267 1888184 Lal9g0297 9 1909193 1910110 LSH
Lal25g0208 25 1417109 1417975 Lal2g0316 2 1887267 1888184 PCT
Lal10g1218 10 18542256 18543194 Lal2g0316 2 1887267 1888184 PCT
Lal2g0316 2 1887267 1888184 Lal25g0208 25 1417109 1417975 PCT
Lal2g0316 2 1887267 1888184 Lal10g1218 10 18542256 18543194 PCT