Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0301 ATGGGAAGCCAATGGAGAAAAGTGAAGCTTGCACTTGGGTTCAATAACTGTGTTCACATTCCTAGAAATTTTGATGATTCTTCCTCGTCCCTCAACTCCGCCCCCGAAAGGTTTTCCGACAGTATCTCATCCTCCGCTGTTATCTCGCCGACCGGTGACTCATCCGGTTACCGTCAAAGCACTCCTAGACCATCCTCCTCCGGTCTCCGGTTACCCAAATCAGGACCCAAATCCCCTAAGGGGACTTGTGCAATATGCCTGAACATAATGAAACCAGGACAGGGCCATGCCATTTTCATTGCAGAATGTTCTCACTCTTTCCATTTCTACTGCATCACTTCTAATGTAAAACATGGGAACCAGAATTGTCCTGTCTGCAGAGCAAAATGGAAAGAAGTTCCTTTTCACAGTCCTGCTTATAATGTCCCCCATAATAACATGGCTCGAATCAACCCACTAACCCCTCGTGATGATGACTGGACAACTCTCTTAAGAATTCCTTCTCAACAACTCGATGCAGGTCGGCAGAGTTCATCACTTAATCATGCTCCTGAGCCAGCAATCTTTGATGATGATGAAGCCCTGGATCAACAAAATTCAAATACCCACAATAAAAATGAGGATGATCACAATATAGTAAGCACATTGGAGATCAAAACATATCCTGAAGTTTCAGCTGTTCCAAAGTCAGCCTCACGTGATAATTTTGCTGTATTAATCCATCTCAAGGCTCCTCCTTCAGGGAGAAAACAAAATGATGGTGGAAACAATACTGAACAACCTCCTTCGGATCAAAATTCCCGTGCTTCAGTTGATCTAGTTACAGTTCTCGATGTAAGTGGTAGCATGGGAGGTACTAAGCTTGCACTGTTAAAGCGAGCTATGGGCTTTGTCATACAGAACCTGGGTCCATCAGACCGGCTGTCTGTCATTGCCTTCTCCTCCACTGCGCGGCGCGTTTTCCCTCTTCGGCAGATGACTGATACTGGACGACAGCAGGCAATACAAGCTGTCAATTCCTTGGTTGCCAGTGGTGGTACAAACATTGCTGAAGGGTTGAGGAAAGGCGCTAAGGTGTTTGTTGACCGCCGATGGAAGAACCCAGTTAGCAGCATCATATTACTATCTGATGGGCAGGATACGTACTCAGTCAGTAGCAGGCCAAATGTTGAAACAAATTACCAGTTACTTGTCCCGAACTCCATCCATCGCAATAATGGTACAGGCTTGTCAATACCTGTGCATGCATTTGGCTTTGGATCGGACCATGATGCTACTTCAATGCATTCAATCTCTGATATATCTGGTGGTACATTTTCTTTCATTGAAGCTGAGGATGTGATTCAGGATGCATTTGCACAATGTATAGGGGGGCTCTTGAGTGTGGTGGTGCAAGAATTACAGGTCAAAGTTGAGTGTGTTCACCCTAGTTTGCAACTTGGTTCAGTAAAAGCGGGAAGTTACCGCACAAGCTTGATGCCCAATGCTAGAATGGCTTCTATTAATGTAGGAGATCTTTATGCTGAAGAAGAAAGGGATTTTTTGGTGACAGTCAATGTTCCAGTTGATAGTTCAAGTGATGAGATGACATTGTTGATTGTGAGAGGTATTTACAGAGACCCTATAACAAGAGAAATGGTGGATTTGGAAGAAAGTAGTGAAGTAAAGATTGAGAGACCCAACATAGGTAGAACAGAACTATTTGTATCAATAGAGGTAGAGAGACAACGAAACAGGCTTCGTGCAGCAGAGGCAATGGGTGAGGCTAGAGTTGCAGCTGAACGCGGTGATTTATCTGTTGCAGTTTCAGTTTTGGAGAGTTGTCACAAGGCATTGTCTGAAACAGTTTCTTCCCAAGCTGGGGATCGTTTAAGCATTGCTCTTTCGGCTGAATTAAAGGAGATGCAGGAGAGGATGGCGAGCCGACGTGTTTATGAGCAATCTGGAAGGGCTTATGTTCTGTCAGGATTGAGCTCACATTCATGGCAAAGGGCAACCGCTCGAGGCAATTCCACGGAGAGCACAAGCCTTCTGCAATCGTATCAAACACCTTCCATGGTCGACATGGTGACACGTTCTCAGACCATCATTTTAGGGACTCCACAACATAGACCAATCCTCCGCCCTGCAAAATCATTCCCTGAGAGGCATGGACGGGAATAA 2163 0.4521 MGSQWRKVKLALGFNNCVHIPRNFDDSSSSLNSAPERFSDSISSSAVISPTGDSSGYRQSTPRPSSSGLRLPKSGPKSPKGTCAICLNIMKPGQGHAIFIAECSHSFHFYCITSNVKHGNQNCPVCRAKWKEVPFHSPAYNVPHNNMARINPLTPRDDDWTTLLRIPSQQLDAGRQSSSLNHAPEPAIFDDDEALDQQNSNTHNKNEDDHNIVSTLEIKTYPEVSAVPKSASRDNFAVLIHLKAPPSGRKQNDGGNNTEQPPSDQNSRASVDLVTVLDVSGSMGGTKLALLKRAMGFVIQNLGPSDRLSVIAFSSTARRVFPLRQMTDTGRQQAIQAVNSLVASGGTNIAEGLRKGAKVFVDRRWKNPVSSIILLSDGQDTYSVSSRPNVETNYQLLVPNSIHRNNGTGLSIPVHAFGFGSDHDATSMHSISDISGGTFSFIEAEDVIQDAFAQCIGGLLSVVVQELQVKVECVHPSLQLGSVKAGSYRTSLMPNARMASINVGDLYAEEERDFLVTVNVPVDSSSDEMTLLIVRGIYRDPITREMVDLEESSEVKIERPNIGRTELFVSIEVERQRNRLRAAEAMGEARVAAERGDLSVAVSVLESCHKALSETVSSQAGDRLSIALSAELKEMQERMASRRVYEQSGRAYVLSGLSSHSWQRATARGNSTESTSLLQSYQTPSMVDMVTRSQTIILGTPQHRPILRPAKSFPERHGRE 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0301 720 SMART ring_2 83 126 IPR001841 -
Lal2g0301 720 Gene3D von Willebrand factor, type A domain 271 457 IPR036465 -
Lal2g0301 720 Pfam VWA / Hh protein intein-like 624 695 IPR032838 -
Lal2g0301 720 CDD RING-H2 83 127 - -
Lal2g0301 720 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 218 IPR013083 -
Lal2g0301 720 Pfam RING-like zinc finger 83 112 IPR001841 -
Lal2g0301 720 MobiDBLite consensus disorder prediction 42 72 - -
Lal2g0301 720 ProSiteProfiles Zinc finger RING-type profile. 83 127 IPR001841 -
Lal2g0301 720 SUPERFAMILY vWA-like 269 456 IPR036465 -
Lal2g0301 720 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 3 717 - -
Lal2g0301 720 SUPERFAMILY RING/U-box 78 135 - -
Lal2g0301 720 MobiDBLite consensus disorder prediction 250 270 - -
Lal2g0301 720 CDD vWA_C3HC4_type 271 443 - -
Lal2g0301 720 ProSiteProfiles VWFA domain profile. 272 456 IPR002035 -
Lal2g0301 720 PANTHER RETROELEMENT POL POLYPROTEIN-LIKE 3 717 - -
Lal2g0301 720 MobiDBLite consensus disorder prediction 244 270 - -
Lal2g0301 720 Pfam von Willebrand factor type A domain 272 453 IPR002035 -
Lal2g0301 720 MobiDBLite consensus disorder prediction 42 78 - -
Lal2g0301 720 SMART VWA_4 270 452 IPR002035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0301 Lal-Chr2 1768478 1776031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0301 80 127 C3H Transcription Factor Family AT5G41440 41.667 2.02e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0301 - - gmx:100813784 1117.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0301 2 1768478 1776031 Lal2g0301 2 1768478 1776031 ECH