Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0287 ATGAGTAGTATTGAGGAAAAAAAGCCTGAGACTTTGACTGATGAAGAACATGATGCTGCAACTTTTTCTTGCACAAGAACAGTTTCTCTTCCTGTCCAAACGGTTGATGATCCAATAGGTATAACTGAAGAAACCACACATGTTCCTCCTCGGAAGCGACAGAATCTTCTTCTAGAAATACCTTCAAGAACACCAGAGGAGTGCTCCCAAGATTTTGTTGCAATCAAAATGCCAATGACACCAAGTCCAACTCCCACTCCCAAGAGAGTGAATTTTCTCGTGACTTCTCGCTCTGTTGATGCTCCAACAAGTAATGCTCATATGCCTCCAACTCCAAATTCAAGAGGCAAATCATCCAGAAGAAGCATCCTACCAAAATTGAGCTTCAGGTATAGGACTCCTACAGATATTGAACAAGCTACTTCTGCAGCTCCTGAAGGTTCCTCTTCAGGCTATCGAGTAAAGCCTTCAATCTCAAGATCATTGTCCCTTTCGAAGATATTTACACCTAGGATTAAGAGAACGTCATCATCACCAGTAGATGAAATTGGTCATTCAATCACTGAATCTGTTCATGGTGGAAGCATTGGTGGTCTTCTAAATAAAAGAGAGGCTCAGCCACAAAAGAAGATAGCTCGCTCTCTTTCGGTGCCTGTCAACAACAAAGACAAAAGCATAAGGAGGATGGATTCATTTTTCCGCATTATTCCTTCAACTCCACGAGTAAAGGAAGGAAATGAATTGATAACATCCCCAACAAACGATACTGAAAACATTGATGGTGATGGCGAAGATATAGCTGAAGAAGAGGCTGTGTGTAGAATTTGTCTGGTTGATCTATGTGAAGGAGGTGAGACCTTCAAGTTGGAATGCAGCTGCAAAGGTGAACTTGCTCTTGCTCACCAGGAATGTGCTATTAAATGGTTTAGTATCAAGGGTAACAAGACCTGTGATGTGTGCAAGGAGGAAGTTCGGAACCTACCTGTGACTCTATTACGTATTCAAAGTGTTCGAAATCAGAATAGTGGAGTAAGGTCTCAGCTTGAACATGTAAATGGATTCAGGGTTTGGCAGGAAGTACCAGTGCTTGTAATTATCAGCATGCTTGCCTATTTCTGTTTTCTTGAGCAGTTATTGGTTGGGAAAATGGGAACTGGTGCAATTGCCATATCTCTTCCATTTTCCTGTGTACTAGGTCTACTCTCCTCCATGACATCATCAACCATGGTGAAGAGCAGGTTCATATGGATTTATGCATCATTCCAGTTTGCTCTGGTGGTTATCTTTGCACATATATTTTACTCCTTGGTTCATGTGCAAGCAGTTCTGTCAATCCTTCTTGCCACATTTGCTGGTTTTGGTGTGGTGATGAGTGGAAGTTCTATTCTGGTAGAGGTTTTTAGATGGAGAAGAAGATGGCAGGCTTCAGAGCGGCAACATGGTCTTCAACGGATGACACAACCACTACAAAACTCTCGGCCTGTAAACACGCCGCCGCATTCAGGCCCTGCCCACGACAACACTCAAACTGTGGTGCAAGATCAACAGAACTCAAGTCAAAGCTGA 1566 0.4278 MSSIEEKKPETLTDEEHDAATFSCTRTVSLPVQTVDDPIGITEETTHVPPRKRQNLLLEIPSRTPEECSQDFVAIKMPMTPSPTPTPKRVNFLVTSRSVDAPTSNAHMPPTPNSRGKSSRRSILPKLSFRYRTPTDIEQATSAAPEGSSSGYRVKPSISRSLSLSKIFTPRIKRTSSSPVDEIGHSITESVHGGSIGGLLNKREAQPQKKIARSLSVPVNNKDKSIRRMDSFFRIIPSTPRVKEGNELITSPTNDTENIDGDGEDIAEEEAVCRICLVDLCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKTCDVCKEEVRNLPVTLLRIQSVRNQNSGVRSQLEHVNGFRVWQEVPVLVIISMLAYFCFLEQLLVGKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASFQFALVVIFAHIFYSLVHVQAVLSILLATFAGFGVVMSGSSILVEVFRWRRRWQASERQHGLQRMTQPLQNSRPVNTPPHSGPAHDNTQTVVQDQQNSSQS 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0287 521 MobiDBLite consensus disorder prediction 134 156 - -
Lal2g0287 521 MobiDBLite consensus disorder prediction 99 156 - -
Lal2g0287 521 MobiDBLite consensus disorder prediction 1 20 - -
Lal2g0287 521 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 328 IPR013083 -
Lal2g0287 521 SMART ringv_2 272 321 IPR011016 GO:0008270
Lal2g0287 521 CDD RING_CH-C4HC3_MARCH 273 321 - -
Lal2g0287 521 SUPERFAMILY RING/U-box 269 324 - -
Lal2g0287 521 ProSiteProfiles Zinc finger RING-CH-type profile. 265 327 IPR011016 GO:0008270
Lal2g0287 521 MobiDBLite consensus disorder prediction 99 121 - -
Lal2g0287 521 PANTHER OS02G0165000 PROTEIN 42 491 - -
Lal2g0287 521 MobiDBLite consensus disorder prediction 480 521 - -
Lal2g0287 521 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 42 491 - -
Lal2g0287 521 Pfam RING-variant domain 273 320 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0287 Lal-Chr2 1669510 1674627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0287 270 327 C3H Transcription Factor Family AT2G37950 49.153 4.79e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0287 - - gmx:100788108 748.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0287 2 1669510 1674627 Lal2g0287 2 1669510 1674627 ECH
Lal2g0287 2 1669510 1674627 Lal9g0266 9 1651625 1664386 LSH
Lal25g0180 25 1162863 1167362 Lal2g0287 2 1669510 1674627 PCT
Lal2g0287 2 1669510 1674627 Lal25g0180 25 1162863 1167362 PCT