Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0278 ATGGAAATTGATCTGAACCATGCAGTGACTGAGGTTGAGAAGAATGCATTTTGTAATGGGGAATGTGATGAGAAAGGTGTTTGTGTTTGTTATTTGTCCTCCTCTAATTCAACTTGTTCATCTTCTACTTCCCCTTCACACCATGTTTCTTCTTCTTACCTTGAGCTTTGGCATGCATGTGCTGGCCCCCTCACTTCACTTCCAAAGAAGGGAAATGTGGTTGTCTATTTTCCACAAGGTCACTTAGAACAGGTTGCATCTTTTACACCAATGGAGATGCCCACCTATGATCTTCAGCCACAAATATTTTGCAGGGTTGTCAATGTCCAATTACTTGCCAATAAGGAGAATGATGAGGTTTATACACAAGTTACTTTGCTCCCCCAGGCTGAGTTGGAAGGGACACATTTGAAAGGAAAGGAGGTTGAGGAATTAGGATCAGATGAGGAGGGAATTGGAGTAACACCTACAAAATCAACCCCTCACATGTTCTGCAAAACACTTACTGCCTCAGATACAAGCACTCATGGAGGATTCTCTGTTCCTCGTAGAGCTGCTGAAGACTGTTTTCCTCCTTTGGATTATAAGCAGCTCAGACCCTCTCAAGAACTTGTTGCCAAAGACCTGCATGACGTGGAGTGGAAATTTCGTCATATTTATAGAGGTCAGCCAAGGCGGCATCTGCTCACTACTGGCTGGAGTATTTTTGTTAGCCGAAAGAATCTTGTTTCGGGTGATGCAGTACTCTTTCTACGGGGTGAAAATGGAGAATTGAGATTAGGAATCAGGAGAGCAGTTCGATTAAGAAATGGTCTTCCAGAATCAATTGTTGGTAACCAGAACTGTTATCCTAATTTCCTTTCTTCTGTGGCTAATGCTATATCAACCAAAAGCATGTTTCGCATTTTCTACAGTCCAAGAGCAAGTCACTCAGACTTTGTTGTACCCTACGGGAAATATGTTAAAAGTATCAAGAATCCAGTGACCACTGGGACAAGATTCAAAATGAGATTTGAAATGGATGAATCTACAGAAAGAAGGTGCAATAGCGGTATGGTGATTGGAACGAGTGATTTTGACCCCTATAGATGGCCTAAATCAAAATGGAGGTGCTTGATGGTCAGGTGGGATGAGAATATTGAGACTAATCATGAAGTTCATGTATCTCCATGGGAGATTGATCCTTCTGCATCTCTCCCTCCCCTGAGCATTCAGTCTTCCCCGAGATTGAAGAAACCACGGACAGGTCATCATGCCGCCTCTCCTATTCACTTCATCAGTGGGGTGGCAGCAGGAGGCAGAGGATTAAATGACTTTGAGGAGTCTGTAAGATCACCCAAGGTCTTGCAAGGTCAAGAAAATTCAGGTTTTGTGTCACACTATTACGGACGTGACACAGTAACCATCCGGCCAGATTTTGAGATGAACTCTCCAAGTCATCCAAATCTAGCATCAACAGGAGGAAGAAAGAGCATCTCTGCCGAGCTTATGAGTGTTCACCCTTTAAGTTATGCAGCCTTTGTGGAAACTAATAGGTTTCCAAGGGTCTTGCAAGGTCAAGAAATATGTCCAATGAATTCCCTCACGGGAAAGTTTGATTTCAAAGTTGGAGCTTGGGGCAATCCTGATGTCAGTTGCACAACTTTCAACTCGCGTCAAGCAACCAAACCCAACTTTCAATCTTTAGGATCACAAGTTCTTCAATCTCCATATTTTCAATATGGAGATATTAACAAAGATGGTAAAGCTAGCATGTTTTGCTCTAAACCTATAAATCTCCACAGAGAGAATAGTCCATATAACACAACTTTAAGTCAAGCAAGGATCACGAGAAATGAAGTTGGATTATCAGATATCTCAAGTGAGCACAAGCTGCATGATAGTATTTCTGTTGCTGCTTCATTAGAGGCATCAAATATGAGGATTCAAGATGAAAACAATGTCAAGGGGAAGGTAATTGGCTGCAAACTATTTGGATTTCCTTTGTCTGGGGAAACTACTACCCAAAATTTGCAGAACTCTGGTAAAAGGAGTTGCACAAAGGTTCACAAGCAAGGAAGCTTAGTTGGAAGAGCCATTGATCTCTCAAGATTGAGCTGCTACAATGACCTGCTGAGTGAACTAGAGAGACTATTTGGCATGGAAGGACTTCTAGGAGATCCTGATAAGGGATGGAGAATCCTTTACACTGACAGTGAGAATGACATAATGGTTGTGGGGGATGACCCTTGGCATGAGTTTTGCAATGTGGCGTCCAAGATCCATATATATACCCACGAAGAGGTAGAGAATATGACACTTGGGATGACCAGTGATGATACTAATAGCTGTTTAGAGCAGGCACCAGTGATCATGGAGGCATCCAAGTCTTCCTCAGTGGGTCAGCCAGATTCTCCAACAGTAGTTAGAGTCTAA 2415 0.4257 MEIDLNHAVTEVEKNAFCNGECDEKGVCVCYLSSSNSTCSSSTSPSHHVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASFTPMEMPTYDLQPQIFCRVVNVQLLANKENDEVYTQVTLLPQAELEGTHLKGKEVEELGSDEEGIGVTPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQLRPSQELVAKDLHDVEWKFRHIYRGQPRRHLLTTGWSIFVSRKNLVSGDAVLFLRGENGELRLGIRRAVRLRNGLPESIVGNQNCYPNFLSSVANAISTKSMFRIFYSPRASHSDFVVPYGKYVKSIKNPVTTGTRFKMRFEMDESTERRCNSGMVIGTSDFDPYRWPKSKWRCLMVRWDENIETNHEVHVSPWEIDPSASLPPLSIQSSPRLKKPRTGHHAASPIHFISGVAAGGRGLNDFEESVRSPKVLQGQENSGFVSHYYGRDTVTIRPDFEMNSPSHPNLASTGGRKSISAELMSVHPLSYAAFVETNRFPRVLQGQEICPMNSLTGKFDFKVGAWGNPDVSCTTFNSRQATKPNFQSLGSQVLQSPYFQYGDINKDGKASMFCSKPINLHRENSPYNTTLSQARITRNEVGLSDISSEHKLHDSISVAASLEASNMRIQDENNVKGKVIGCKLFGFPLSGETTTQNLQNSGKRSCTKVHKQGSLVGRAIDLSRLSCYNDLLSELERLFGMEGLLGDPDKGWRILYTDSENDIMVVGDDPWHEFCNVASKIHIYTHEEVENMTLGMTSDDTNSCLEQAPVIMEASKSSSVGQPDSPTVVRV 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0278 804 SUPERFAMILY CAD & PB1 domains 679 756 - -
Lal2g0278 804 SUPERFAMILY DNA-binding pseudobarrel domain 154 275 IPR015300 -
Lal2g0278 804 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 22 792 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lal2g0278 804 Gene3D - 328 400 - -
Lal2g0278 804 Gene3D - 162 266 IPR015300 -
Lal2g0278 804 CDD B3_DNA 162 264 IPR003340 GO:0003677
Lal2g0278 804 Pfam B3 DNA binding domain 164 265 IPR003340 GO:0003677
Lal2g0278 804 Gene3D - 673 766 - -
Lal2g0278 804 ProSiteProfiles PB1 domain profile. 677 761 IPR000270 GO:0005515
Lal2g0278 804 ProSiteProfiles B3 DNA-binding domain profile. 164 266 IPR003340 GO:0003677
Lal2g0278 804 PANTHER AUXIN RESPONSE FACTOR 22 792 - -
Lal2g0278 804 SMART B3_2 164 266 IPR003340 GO:0003677
Lal2g0278 804 Pfam Auxin response factor 290 372 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0278 Lal-Chr2 1629921 1635716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0278 49 804 B3 DNA Binding Superfamily AT5G60450 58.693 0.0 824
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lal2g0278 AUX_IAA 1.6e-05 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0278 - - lang:109351638 1535.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0278 2 1629921 1635716 Lal2g0278 2 1629921 1635716 ECH
Lal1g0372 1 2238373 2248840 Lal2g0278 2 1629921 1635716 LSH
Lal25g0172 25 1101948 1109819 Lal2g0278 2 1629921 1635716 PCT
Lal2g0278 2 1629921 1635716 Lal25g0172 25 1101948 1109819 PCT