Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0276 ATGTGGCTTCCTGTCTTTAATGGCTTAACTACTCCCCTGTTTGAATTGTTTAGAACCAACCCAGTGCAGAGTGTGGATAGAACCTTTCAACTCACAAGAGCAGACAAGGACTTGGTATCAAAACAGGAATTTGATGTTCAGGCTTGGTGTATGCTTGTGAACGACAAGGTTTCATTTAGGATGCAATGGCCACAGTATACAGACATGCAGGTCAATGGTGTTCCTGTTCGTGCTATTAACAGACCTGGTTCACAATTGCTTGGGGCAAATGGTCGTGATGATGGTCCAATTATCACGCCATATATAAAAGATGGAATCAATAAGATTCACTTAACTGGGTGTGATGCTCGCATTTTTTGTTTTGGGATCCGTATTGTTAAAAGACGCAGTATGCAGCAGGTCCTAAACATAATTCCCAAGGAGCCTGACGGTGAGCGTTTTGAAGATGCCCTTGCACGTGTCTGTCGATGCGTTGGAGGTGGAAATGCAGATGACAATGCTGATAGTGACAGTGATTTTGAAGTGGTTTCAGATACTTTTACCATCAACCTTCGTTGTCCAATGAGCGGTTCAAGAATGAAGATCGCAGGAAGATTCAAACCTTGTGTTCACATGGGTTGTTTTGATCTTGAAGTTTTTGTGGAAATGAATCAACGGTCAAGGAAGATGATACATTGTGGTGAAGAGGTTACAGAGGTTGAGGTGAAGCCTGATGGCTCTTGGCGTGTGAAGACAAAGAGTGAAAGTGAACGCCTAGAGATAGGGAATCTTGCACAATGGCACTCTCCTGATGGATCCCTCTGTATTTCCAATGATAGAGAAAAAAAATTGGAAACATTGAAGCAGGTCAAACAAGAAGGTGTTTCAGGCTCTCCTACTGGTTTAAAAATTGGCATAAGGAAGAACCGTAATGGAGTTTGGGAAGTCAGCAAACCTGAGGACACAAACACTTCTTCTGGCAATAGATTGAAAGGGGTCTTTGGAAATCATGAACAAGTTGTTATTCCAATGAGCAGCAGTGCCACTGGAAGTGGTCGGGATGGTGATGATCCTAGCGTAAATCAGGGTGGCGGTGGACATATTGATTATTCTACTGCCAATGGGATTGAGTTGGATTCTCTGTGTCTCAGTAATGCTGCTTTGGCATATGGATATACTGCACATAATACTTCGGCTCAAGCGGTTGCTGCTGAAGTTATTATTCTGAGTGATTCGGATGAAGACAATGACATGCTGATATCTCCTTCAATTGCATATAAGAACAACCAAACTGGTGCTGCAGGAGATAGTTACTCGGTGCCACCACATGGAATTGTTGATTCGTACACTGAAGATCACAGTCTCGGTGGAAATTCATGCTTGGGACTTTTTCCTGACGAAGATGATTTTGTGATGCATTCCTCTCTGTGGTCATTGCCGTCCGGAACACAGGCTGATCCTGGATTCCAATTATTTGGTTCTAATGCAGATGTATCAGATGCTTTGGTCCATTTGCAGCATGATCCTATTAATTTCTCTTCATCATTGAATGGCTATTCATTGGCTCCTGACACTGCTCTGGGATCTAGTACTCTTATACCAGATTCCTCTGCTTGTCGGTCTGATGCTGACTTAAATGGTGGTTTGGTTGATAATCCATTGGCATTTGCTGGAGATGATCCCTCACTTCAGATTTTTCTCCCCACAAGACCAGCAGAATCATCAGTTCAGCATGGATCAAGAGATCAGACAAATGTGTCTAATGGTGTCTGCACTGAGGATTGGATATCTCTTAGTCTTGGAGGTGGTGCTGCTGGCAGTAATGGCAATGCTTCTACTCAAAATGGATTTAATTCTGGCCTTCAAGTCCCAACCAGAGGAGCTGCCACAAATAATAGGGCTGATACTGGTCTGTTACTTTCTGACTCTAAATCTCAAGTGTTAATTTTTTAA 1932 0.4291 MWLPVFNGLTTPLFELFRTNPVQSVDRTFQLTRADKDLVSKQEFDVQAWCMLVNDKVSFRMQWPQYTDMQVNGVPVRAINRPGSQLLGANGRDDGPIITPYIKDGINKIHLTGCDARIFCFGIRIVKRRSMQQVLNIIPKEPDGERFEDALARVCRCVGGGNADDNADSDSDFEVVSDTFTINLRCPMSGSRMKIAGRFKPCVHMGCFDLEVFVEMNQRSRKMIHCGEEVTEVEVKPDGSWRVKTKSESERLEIGNLAQWHSPDGSLCISNDREKKLETLKQVKQEGVSGSPTGLKIGIRKNRNGVWEVSKPEDTNTSSGNRLKGVFGNHEQVVIPMSSSATGSGRDGDDPSVNQGGGGHIDYSTANGIELDSLCLSNAALAYGYTAHNTSAQAVAAEVIILSDSDEDNDMLISPSIAYKNNQTGAAGDSYSVPPHGIVDSYTEDHSLGGNSCLGLFPDEDDFVMHSSLWSLPSGTQADPGFQLFGSNADVSDALVHLQHDPINFSSSLNGYSLAPDTALGSSTLIPDSSACRSDADLNGGLVDNPLAFAGDDPSLQIFLPTRPAESSVQHGSRDQTNVSNGVCTEDWISLSLGGGAAGSNGNASTQNGFNSGLQVPTRGAATNNRADTGLLLSDSKSQVLIF 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0276 643 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 227 IPR013083 -
Lal2g0276 643 ProSiteProfiles Zinc finger SP-RING-type profile. 169 254 IPR004181 GO:0008270
Lal2g0276 643 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 18 223 - -
Lal2g0276 643 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 225 606 - -
Lal2g0276 643 Pfam MIZ/SP-RING zinc finger 182 221 IPR004181 GO:0008270
Lal2g0276 643 MobiDBLite consensus disorder prediction 338 359 - -
Lal2g0276 643 PANTHER E3 SUMO-PROTEIN LIGASE SIZ1 225 606 - -
Lal2g0276 643 PANTHER E3 SUMO-PROTEIN LIGASE SIZ1 18 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0276 Lal-Chr2 1613442 1621469 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0276 - - gmx:100797252 967.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0276 2 1613442 1621469 Lal2g0276 2 1613442 1621469 ECH
Lal2g0276 2 1613442 1621469 Lal9g0262 9 1627218 1637963 LSH
Lal25g0171 25 1092482 1108581 Lal2g0276 2 1613442 1621469 PCT
Lal10g1239 10 18686169 18696195 Lal2g0276 2 1613442 1621469 PCT
Lal2g0276 2 1613442 1621469 Lal25g0171 25 1092482 1108581 PCT
Lal2g0276 2 1613442 1621469 Lal10g1239 10 18686169 18696195 PCT