Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0250 ATGGCTCCCGCTAAAGTTGATAGTTCTAAGAAGGGTGATCCAAAGGCACAGGCCTTGAAGGCTGCGAAAGCAGTGAAATCAGGCCCTACATTCAAGAAGAAGGCGAAGAAAATCCGAACAAAGGTTACCTTCCATAGGCCTAAGACATTGACAAAGGAAAGGAACCCGAAATATCCTCGCATTAGTGCTACTCCTAGGAATAAGCTTGATCATTATCAAATTCTGAAGTTCCCTCTTACCACCGAGTCTGCAATGAAGAAGATTGAAGACAATAACACTTTGGTCTTCATTGTTGACCTACGTGCTGACAAGAAGAAGATTAAGGATGCTGTTAAGAAAATGTATGATATCCAGGCCAAGAAGGTCAACACTTTGATCAGGCCTGATGGCACTAAGAAGGCCTATGTCAGGTTGACACCTGATTATGATGCTTTGGATGTAGCAAACAAGATTGGCATTATCTAA 465 0.4237 MAPAKVDSSKKGDPKAQALKAAKAVKSGPTFKKKAKKIRTKVTFHRPKTLTKERNPKYPRISATPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0250 154 ProSitePatterns Ribosomal protein L23 signature. 132 147 IPR001014 -
Lal2g0250 154 PANTHER 60S RIBOSOMAL PROTEIN L23A-2 1 154 - -
Lal2g0250 154 Pfam Ribosomal protein L23, N-terminal domain 15 63 IPR005633 -
Lal2g0250 154 Hamap 50S ribosomal protein L23 [rplW]. 74 154 IPR013025 GO:0003735|GO:0005840|GO:0006412
Lal2g0250 154 PANTHER 60S RIBOSOMAL PROTEIN L23A 1 154 IPR013025 GO:0003735|GO:0005840|GO:0006412
Lal2g0250 154 MobiDBLite consensus disorder prediction 1 38 - -
Lal2g0250 154 Gene3D - 35 154 IPR012677 -
Lal2g0250 154 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 71 147 IPR012678 GO:0003735|GO:0005840|GO:0006412
Lal2g0250 154 TIGRFAM uL23_arch: ribosomal protein uL23 78 154 IPR019985 GO:0003735|GO:0005840|GO:0006412
Lal2g0250 154 Pfam Ribosomal protein L23 74 136 IPR013025 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0250 Lal-Chr2 1464995 1466436 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0250 1 154 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 90.260 2.97e-73 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0250 K02893 - jre:109021970 273.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0250 2 1464995 1466436 Lal2g0250 2 1464995 1466436 ECH
Lal1g0344 1 2052427 2054260 Lal2g0250 2 1464995 1466436 LSH
Lal8g0117 8 801887 804059 Lal2g0250 2 1464995 1466436 PCT
Lal2g0250 2 1464995 1466436 Lal8g0117 8 801887 804059 PCT