Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0246 ATGGTTCATCAGGATTTCCGAAAAGGTCCATGGACAGAACAGGAGGACTTGAAGTTGGTCTCATTTGTAGGGTTGTTTGGAGATCGAAGGTTAAGGTGGGTTAATTACCTGCACCCTGGTCTCAAACGTGGCAAGCTCACACCCCAAGAAGAACGTCTTGTCATGGAGCTTCACACCAAATGGGGAAATAGATGGTCAAGAATTGCCCGCAAACTACCGGGGCGCACAGACAATGAGATTAAGAATTATTGGAGGACTCACATGAGGAAGAAGGCTCAGGAGGAAAAGCGTGTAGCTGCATCACCAGCATCTTCAAGTTGCCAATCCTCACTATCTTCAAGTAATGATAATCATACTGTAAATTCAGTACATGCTTCCAAAAAAGCTGGAGAAGAAAGCTTTTATGACACAGGAGGGCCTAATAACATGGTTGCCTCAAATGAAAATATTAATGTTGGAGAAGATAACCAAGATGGTGAACAAGGGTACTCTATGGATGATATATGGAAAGATATTGACATGTTAGAAGATAATATTATTATGCCTTCTACATCATGGGAGTATTCTTCTGAACCACTATGGATGATGAATGAAGAAGAAAGTAAGATGTTATTCCCTTTAAGTGACCAATGTTTTTCCTGCTATGAACAAGGCACTGCATTTCTGACCGGTTAA 675 0.4119 MVHQDFRKGPWTEQEDLKLVSFVGLFGDRRLRWVNYLHPGLKRGKLTPQEERLVMELHTKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKAQEEKRVAASPASSSCQSSLSSSNDNHTVNSVHASKKAGEESFYDTGGPNNMVASNENINVGEDNQDGEQGYSMDDIWKDIDMLEDNIIMPSTSWEYSSEPLWMMNEEESKMLFPLSDQCFSCYEQGTAFLTG 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0246 224 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 92 IPR017930 -
Lal2g0246 224 PANTHER TRANSCRIPTION FACTOR MYB48-RELATED 4 204 - -
Lal2g0246 224 SUPERFAMILY Homeodomain-like 5 84 IPR009057 -
Lal2g0246 224 Pfam Myb-like DNA-binding domain 43 87 IPR001005 -
Lal2g0246 224 ProSiteProfiles Myb-like domain profile. 3 88 IPR001005 -
Lal2g0246 224 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 4 204 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lal2g0246 224 CDD SANT 47 88 IPR001005 -
Lal2g0246 224 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 30 IPR017930 -
Lal2g0246 224 SMART sant 42 90 IPR001005 -
Lal2g0246 224 SMART sant 7 39 IPR001005 -
Lal2g0246 224 MobiDBLite consensus disorder prediction 99 126 - -
Lal2g0246 224 Gene3D - 45 116 - -
Lal2g0246 224 MobiDBLite consensus disorder prediction 91 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0246 Lal-Chr2 1449305 1450660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0246 1 222 MYB Transcription Factor Family AT5G59780 49.231 6.70e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lal2g0246 Myb_DNA-binding 1.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0246 K09422 - tcc:18590753 264.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0246 2 1449305 1450660 Lal2g0246 2 1449305 1450660 ECH
Lal2g0246 2 1449305 1450660 Lal25g0154 25 969761 971244 PCT