Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0236 ATGAAGAGTGATAATGATGATAGTCATAATGAGAATGAGGAAGTGGGAATGGGAAGGTCAAGTGGGAGTTCAAGATGGAACCCAACAAAAGAACAGATAAGTATGTTGGAGAATTTATATAAGGAGGGAATAAGAACTCCAAGTGCTGAAGAGATACAGCACATAACTGCAAGACTCAGGGTGTATGGTCACATCGAAGGCAAGAATGTCTTCTACTGGTTTCAGAATCATAAGGCCAGGCAGCGACAGAAGCAGAAGCAAGAAACTATCGCTTATTTTGATCGCTTTCTTCATAGGCCACACCCCATTTTCACTACACCAATTTGTTCAAATGTTCTGTGCGCACCATATTGCATGCCACAAGCACATGATGAAATCACCTATTATCCTCAACATCCACAGGTGCTTCTATCCGTAGGTATTAGGAGGAACCCGAGTGAGAAAATTTTGCCTATGGGAATTTCAAGTACCTGCAACATCCCGATGGTATATGAAGGCATGCAACCGAGAATCTCTGGTTATAACTTCAGCTTCAGTAACCAAGAAACGTTGGATCTCTTTCCTCTGCATCCAACTGGCATATTGGAAGAAAAAACAACACATGGCCATGTGTCTTCCCTGCCTTTAGTTTCTCCTGATAGTTCCACTGATACACCTTTTGGTTCTTCGGGCCATGTCAATGAAGATGGTTATTGTTCTGGAAATAGACCTTTCTTTAATTTTTTTACTTCTGGGCAAGGGTCTCAAGTGAGTGATTGA 759 0.4177 MKSDNDDSHNENEEVGMGRSSGSSRWNPTKEQISMLENLYKEGIRTPSAEEIQHITARLRVYGHIEGKNVFYWFQNHKARQRQKQKQETIAYFDRFLHRPHPIFTTPICSNVLCAPYCMPQAHDEITYYPQHPQVLLSVGIRRNPSEKILPMGISSTCNIPMVYEGMQPRISGYNFSFSNQETLDLFPLHPTGILEEKTTHGHVSSLPLVSPDSSTDTPFGSSGHVNEDGYCSGNRPFFNFFTSGQGSQVSD 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0236 252 Pfam Homeodomain 24 83 IPR001356 GO:0003677
Lal2g0236 252 CDD homeodomain 25 85 IPR001356 GO:0003677
Lal2g0236 252 Gene3D - 25 92 - -
Lal2g0236 252 SUPERFAMILY Homeodomain-like 18 90 IPR009057 -
Lal2g0236 252 PANTHER TRANSCRIPTION FACTOR HOMOBOX-WOX FAMILY-RELATED 8 245 - -
Lal2g0236 252 MobiDBLite consensus disorder prediction 1 28 - -
Lal2g0236 252 ProSiteProfiles 'Homeobox' domain profile. 19 84 IPR001356 GO:0003677
Lal2g0236 252 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 8 245 IPR044555 GO:0003700|GO:0099402
Lal2g0236 252 SMART HOX_1 21 88 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0236 Lal-Chr2 1382797 1383870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0236 14 252 Wox Gene Family AT5G59340 42.857 2.15e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Lal2g0236 Homeodomain 6.3e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0236 - - pvu:PHAVU_011G064900g 320.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0236 2 1382797 1383870 Lal2g0236 2 1382797 1383870 ECH
Lal1g0330 1 1995324 1996604 Lal2g0236 2 1382797 1383870 LSH