Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0213 ATGAATTCCGAAACGTCGTCGTACTGGTGCTACAGTTGCACACGCAACGTTCACCTTGTTAACCACAACAACATCGCTTGTCCTCACTGTGAAACCGGTTTCCTCGAACAGATCCAACCCGATCCATCACCCACTCACCCTCTCACTCCTTTCCCTGATTCTTCAACTTTATCCAGACAATCCCTCCGCCGTAGACGCCGCTACCCCGGTAACCCCTCGCCGTTCAACCCCGTCATCGTTCTCCGCTCACCTGGAGAGGACGGCCCCGATCATGATGGTAGCATCTTTGAATTGTACTATGATGACGGCGATGGCACCGGTCTCCGCCCCTTGCCGCCGATGATGTCAGAGTTCTTGTTAGGATCTGGATTTGATCGGTTGCTGGAGCAGTTTGCGCAGATCGATATGAACGGGTTTGGGAGGCCGGAGAATCCGCCTGCGTCGAAGGCGGCAGTTGAATCGATTCCGACGGTTAAGATAGAAGAAACGCACGTATGCACCGATTCGCACTGTGCGGTTTGTAAAGAACCGTTTGAACTTGGTTCTGAGGCGCGTGAGTTACCTTGCCAGCATATTTATCACTCCGATTGCATCATTCCATGGCTAGCCTTGCGGAACTCGTGCCCCGTGTGCCGCAGCGAGCTTCCTTCCGAACAGAACCCTCAAGTTTCGACTCAAATCGACGAAGAATCGATCGGTTTAACAATATGGAGGTTGCCAGGCGGTGGATTCGCCGTCGGTAGGTTTTCCGGTGGACGGAGAGCCGGTGAAAGTAATTTACCGGTTGTGTACACGGAGATGGACGGTGGTATGAATAATACAAGTGTAACTCCGAGAATGGTTTCGCGATCAGTGAGAAGCAATAGGGTTAGGGAAAGTGGTGGTGGTGTTGGTAGGTCTTTTCGTAATTTCTTATCATTCTTTGGGAGAATTGGGTCTAGCTCTTCTTCTCATAGTAGAACCCGTAACCGATTTAGTTCTTTATTCAATAGGCTGCGAAGCAGGACATCTGTCATGGAAGTTTAA 1026 0.5068 MNSETSSYWCYSCTRNVHLVNHNNIACPHCETGFLEQIQPDPSPTHPLTPFPDSSTLSRQSLRRRRRYPGNPSPFNPVIVLRSPGEDGPDHDGSIFELYYDDGDGTGLRPLPPMMSEFLLGSGFDRLLEQFAQIDMNGFGRPENPPASKAAVESIPTVKIEETHVCTDSHCAVCKEPFELGSEARELPCQHIYHSDCIIPWLALRNSCPVCRSELPSEQNPQVSTQIDEESIGLTIWRLPGGGFAVGRFSGGRRAGESNLPVVYTEMDGGMNNTSVTPRMVSRSVRSNRVRESGGGVGRSFRNFLSFFGRIGSSSSSHSRTRNRFSSLFNRLRSRTSVMEV 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0213 341 Pfam Ring finger domain 170 212 IPR001841 -
Lal2g0213 341 CDD RING-H2_RNF126_like 171 212 - -
Lal2g0213 341 ProSiteProfiles Zinc finger RING-type profile. 171 212 IPR001841 -
Lal2g0213 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 218 IPR013083 -
Lal2g0213 341 MobiDBLite consensus disorder prediction 38 78 - -
Lal2g0213 341 SMART ring_2 171 211 IPR001841 -
Lal2g0213 341 Pfam zinc-ribbon 6 38 IPR039525 GO:0061630
Lal2g0213 341 SUPERFAMILY RING/U-box 151 218 - -
Lal2g0213 341 Pfam Protein of unknown function (DUF1117) 232 339 IPR010543 -
Lal2g0213 341 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 3 295 - -
Lal2g0213 341 PANTHER OS05G0110000 PROTEIN 3 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0213 Lal-Chr2 1253778 1254803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0213 110 220 C3H Transcription Factor Family AT5G01980 46.847 3.61e-27 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0213 - - gmx:100792874 445.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0213 2 1253778 1254803 Lal2g0213 2 1253778 1254803 ECH
Lal2g0213 2 1253778 1254803 Lal9g0218 9 1341125 1342135 ECH
Lal2g0213 2 1253778 1254803 Lal9g0218 9 1341125 1342135 LSH
Lal25g0134 25 848074 850695 Lal2g0213 2 1253778 1254803 PCT
Lal2g0213 2 1253778 1254803 Lal25g0134 25 848074 850695 PCT