Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0191 ATGGAATCAGATCTTCGGCAACACCCTCCTATGTTATTGGATCAGCAGCAACAGATGAGTTCAGGCTTGACACGATACCGGTCAGCTCCAAGTTCATATTTTTCAAATATAATAGACAACGAGTTCTATGAGAGCATATTCAATCGCCCCTCCAGCCCTGAAACAGAACGAGTTTTCGCTCGGTTTATGAATAGTCTTAGTGGTAGTGGTGGTGATGGCGCTGCCGATGATTCCGTTTCTACGAATATCGAACCGGTTCAGCAAGTTTCTGTTGTGAAGGAAGAGATTATTAACCATCAGTCTCAGGATATGCCTTCAATGAATAATGAACCACTGCTTCTCCAGCAGCAGCAAAGTAATATAAACAATTATGGATCATCTAACCCTCAAAGTTTTTACCATAGCTCTGGAAGACCACCTTTGCCAAATCAAATGAAGACTGGTGGTGGAAGTACTTCTAGCCTTATCAGGCACGGTAGCTCCCCTGCTGGACTCTTTTCAAACATAAACATTGAAGGCTATGCTGCTATAAGAGGCATGGGGGCTTTGGGTGCTGCTAATAGCACTAGTGAGGAAGCAAACTTTTCTCCTACGGCGAGGTTGAAGAATGCACCAAACTACTCGCCAGGGCTAATGTCATCAAGAGCGGAAATTGGGAATGAAAGCAATAAACAAAACAACGCGGTTAATGAAGCCTTTGCTGAAAACCAGGGTAATGATTTCATGACAGGTTTGCCTGTAGGTCTTTGGGATGATTCTTCAGTCTTGGCTGACAATATAAGTGGCGTAAAAAGACCTAGAGATGATGACGCAAAACCATTTTCAGGTTTAAATACAGCTGAAACTCAGAATGAAACAGGAGGCCAACCTTCTGCCCCTTTGACTCATCAGTTGAGTATGCCGAATACTCCATTGGAAATGGCAGCCATTGAGAAGTTCCTGCACTCGTCAGATTCTGTTCCATGGAAGATTCGCGCCAAGAGGGGCTGTGCCACTCATCCAAGAAGCATTGCAGAGAGGGTTAGAAGAACTAAAATTAGTGAGCGAATGAGGAAACTACAAGATTTGGTCCCCAACATGGACAATCAAACAAACACAGCAGACATGTTAGACTTGGCTGTTGATTACATCAAAGACCTTCAAAAACAAGTTCAGAAAGTCATGCTAAGTGTAACTGTTCACACAAGCAACAACAATAGCGGAAAAGTGGTGGAGGATATGCTCGAAAAATGTTTGTATATATTTGTAATAATAATTGGTCTAGAAACTATAGCAACTTTCTCTGTTCAAACAGAAATTTATTGTGTACCACTTCTTCAGCAGTTGTTTGGGAGGGGTGATGGAGGATGGTGGGGAGTACACAATTGTAGTTTTGCATCTTCCGGGAGTTTTTGTTTCACATTGAGTGACATGGGAGGCCAGAGCCAACATGCTTTTGTTGTTTATATACTTTCATGGGTAGAGTGA 1467 0.426 MESDLRQHPPMLLDQQQQMSSGLTRYRSAPSSYFSNIIDNEFYESIFNRPSSPETERVFARFMNSLSGSGGDGAADDSVSTNIEPVQQVSVVKEEIINHQSQDMPSMNNEPLLLQQQQSNINNYGSSNPQSFYHSSGRPPLPNQMKTGGGSTSSLIRHGSSPAGLFSNINIEGYAAIRGMGALGAANSTSEEANFSPTARLKNAPNYSPGLMSSRAEIGNESNKQNNAVNEAFAENQGNDFMTGLPVGLWDDSSVLADNISGVKRPRDDDAKPFSGLNTAETQNETGGQPSAPLTHQLSMPNTPLEMAAIEKFLHSSDSVPWKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDNQTNTADMLDLAVDYIKDLQKQVQKVMLSVTVHTSNNNSGKVVEDMLEKCLYIFVIIIGLETIATFSVQTEIYCVPLLQQLFGRGDGGWWGVHNCSFASSGSFCFTLSDMGGQSQHAFVVYILSWVE 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0191 488 MobiDBLite consensus disorder prediction 261 293 - -
Lal2g0191 488 MobiDBLite consensus disorder prediction 121 156 - -
Lal2g0191 488 Gene3D - 331 401 IPR036638 GO:0046983
Lal2g0191 488 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 14 386 - -
Lal2g0191 488 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 333 389 IPR036638 GO:0046983
Lal2g0191 488 SMART finulus 336 386 IPR011598 GO:0046983
Lal2g0191 488 MobiDBLite consensus disorder prediction 276 293 - -
Lal2g0191 488 MobiDBLite consensus disorder prediction 194 215 - -
Lal2g0191 488 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 330 380 IPR011598 GO:0046983
Lal2g0191 488 Pfam Helix-loop-helix DNA-binding domain 335 381 IPR011598 GO:0046983
Lal2g0191 488 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 14 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0191 Lal-Chr2 1142906 1146608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0191 1 387 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 39.089 5.10e-65 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal2g0191 HLH 2.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0191 - - gmx:100803833 543.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0191 2 1142906 1146608 Lal2g0191 2 1142906 1146608 ECH
Lal2g0191 2 1142906 1146608 Lal9g0194 9 1220491 1224278 ECH
Lal2g0191 2 1142906 1146608 Lal9g0194 9 1220491 1224278 LSH