Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0183 ATGGATTCATCTGATGATATGCACGATGCCAACGACATCGAGTCCCTCGATGACGATTTCTACAGCGACGATGTTCCCATGGATTACTACAGCGACTACGACGATGACGCTGCCGATGATTACTTCGACGATGCCGATGACGCCGACCGAATTTTCTCTCGTCGCCCTGAACAAAATTTTACCATATTGAAGGAATCAGATATCCGGCAAAGACAGGATGAGGACGTCAATAGAGTTGCAACGGTTCTTTCCATATCGAAAGTTTCTGCAAGCATACTACTCCGTCACTACAATTGGAGTGTCAGTAAAGTGCATGATGCATGGTTTGCTGATGAAGATCGTGTCCGTAAAGCAGTTGGCTTGTTGGAGCAGCCAATTGTCCAGTGTCCTAATGATGAAGAGCCTACTTGTGGCATCTGCTTTGAAAATTATCCCCGTTCTAAGATTGCAATGGCTTCTTGTGGTCATCCCTACTGTATCTCATGCTGGGGAGGATATATTGGCACATCCATTAATGATGGTCCTGGATGTTTGACGCTGAGATGTCCTGATCCAACTTGTGGTGCTGCTGTTGGTCAAGATATGATTGATCTTGTAGCATCTGATGAAGATAAACATAAGTATGGCCATTACCTTCTAAGGTCTTATATTGAGGACAATAAGAAGTCCAAGTGGTGTCCTGCTCCAGGTTGTGAGTATGCAGTTACTTTTGATGCTGGCAGTGGAAATTATGATGTCTCTTGCCTCTGTTCATATTGCTTTTGTTGGAATTGCACTGAGGAGGCTCACCGTCCAGTGGACTGCGGCACCGTGGCAAAGTGGATTTTGAAGAACAGTGCAGAGTCTGAAAACATGAACTGGATACTTGCTAACTCAAAGCCATGTCCCAAGTGCAAGCGACCTATTGAAAAAAACCAAGGGTGCATGCACATGACATGCACTCCACCTTGTAAATATGAATTTTGCTGGCTATGCCTTGGTGTATGGTCAGACCATGGTGAAAGAACTGGTGGTTTCTATGCTTGCAATCGTTATGAATCAGCTAAGCAAGAGGGAGTGTATGATGATTCTGAAAAGAGAAGAGAAATGGCAAAAAATTCACTGGAGAGGTACACACATTATTATGAGCGGTGGGCCAGCAATCAATCTTCAAGACAAAAAGCTCTTGCAGATCTACATCAGATGCAAACTGTTCATATTGAGAAGCTTAGTGACACACAGTGCCAGCCTGAGTCACAGCTTAAGTTCATAACCGAGGCCTGGCTACAAATAGTCGAGTGTAGGCGAGTGCTGAAATGGACATATGCATATGGTTACTATTTACCAGAGCATGAGCATGCGAAAAAACAGTTCTTTGAGTACTTACAAGGTGAAGCAGAATCTGGTCTGGAGAGACTTCATCAATGTGCCGAAAAGGAACTACATCCATTCATCAATGATGATGGCCCATCTAGAGAATTTAATGACTTTCGTACAAAGCTAGCTGGATTGACTAGTGTAACTAAGAACTACTTTGAGAACTTAGTTAGAGCATTAGAGAATGGTCTATCTGATGTGGATGCTAATGGAGCTGCCTCCAGTAAAGCAACAAGCTCAAAAAATGCTGCAGGGAGCAGCAAGGGGAGAGGTGGAAGAGGAAAGGGAACGTTGAGAAGCAGCTTGTCCAACAGGATGTCTGATGATAGTCATTGGTTTTGCGAGCAATGTACCTATGCAAATGTCAAATCTGCCACCTCATGTCAGATTTGCAATCATCAGCGTCGATGA 1767 0.4397 MDSSDDMHDANDIESLDDDFYSDDVPMDYYSDYDDDAADDYFDDADDADRIFSRRPEQNFTILKESDIRQRQDEDVNRVATVLSISKVSASILLRHYNWSVSKVHDAWFADEDRVRKAVGLLEQPIVQCPNDEEPTCGICFENYPRSKIAMASCGHPYCISCWGGYIGTSINDGPGCLTLRCPDPTCGAAVGQDMIDLVASDEDKHKYGHYLLRSYIEDNKKSKWCPAPGCEYAVTFDAGSGNYDVSCLCSYCFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKYEFCWLCLGVWSDHGERTGGFYACNRYESAKQEGVYDDSEKRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELHPFINDDGPSREFNDFRTKLAGLTSVTKNYFENLVRALENGLSDVDANGAASSKATSSKNAAGSSKGRGGRGKGTLRSSLSNRMSDDSHWFCEQCTYANVKSATSCQICNHQRR 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0183 588 CDD RING-HC_RBR_TRIAD1_like 137 187 - -
Lal2g0183 588 ProSiteProfiles Zinc finger RING-type profile. 137 183 IPR001841 -
Lal2g0183 588 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 16 536 - -
Lal2g0183 588 Pfam IBR domain, a half RING-finger domain 207 268 IPR002867 -
Lal2g0183 588 Pfam IBR domain, a half RING-finger domain 285 332 IPR002867 -
Lal2g0183 588 Gene3D - 264 519 - -
Lal2g0183 588 MobiDBLite consensus disorder prediction 523 557 - -
Lal2g0183 588 SUPERFAMILY RING/U-box 287 335 - -
Lal2g0183 588 MobiDBLite consensus disorder prediction 11 27 - -
Lal2g0183 588 MobiDBLite consensus disorder prediction 523 538 - -
Lal2g0183 588 SUPERFAMILY RING/U-box 207 275 - -
Lal2g0183 588 SMART zf_4 562 586 IPR001876 -
Lal2g0183 588 SMART ibrneu5 272 342 IPR002867 -
Lal2g0183 588 SMART ibrneu5 206 268 IPR002867 -
Lal2g0183 588 ProSiteProfiles Zinc finger RanBP2 type profile. 560 588 IPR001876 -
Lal2g0183 588 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 16 536 IPR031127 GO:0004842|GO:0016567
Lal2g0183 588 MobiDBLite consensus disorder prediction 1 27 - -
Lal2g0183 588 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 219 IPR013083 -
Lal2g0183 588 ProSiteProfiles TRIAD supradomain profile. 133 346 IPR044066 -
Lal2g0183 588 ProSitePatterns Zinc finger RanBP2-type signature. 564 583 IPR001876 -
Lal2g0183 588 SUPERFAMILY Ran binding protein zinc finger-like 560 587 IPR036443 -
Lal2g0183 588 Pfam Ariadne domain 355 516 IPR045840 -
Lal2g0183 588 SUPERFAMILY RING/U-box 131 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0183 Lal-Chr2 1076480 1082755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0183 17 587 ARIADNE family AT1G65430 69.217 0.0 833
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0183 K11968 - gmx:100810427 1020.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0183 2 1076480 1082755 Lal2g0183 2 1076480 1082755 ECH
Lal1g0289 1 1713368 1719496 Lal2g0183 2 1076480 1082755 LSH
Lal2g0183 2 1076480 1082755 Lal9g0186 9 1154214 1160587 LSH
Lal25g0376 25 2509417 2521006 Lal2g0183 2 1076480 1082755 PCT
Lal10g1061 10 17628152 17636128 Lal2g0183 2 1076480 1082755 PCT
Lal8g0315 8 2111474 2118469 Lal2g0183 2 1076480 1082755 PCT
Lal2g0183 2 1076480 1082755 Lal25g0376 25 2509417 2521006 PCT
Lal2g0183 2 1076480 1082755 Lal10g1061 10 17628152 17636128 PCT
Lal2g0183 2 1076480 1082755 Lal8g0315 8 2111474 2118469 PCT