Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0174 ATGAAGATTCAGTGTGATGTGTGTGAGAAGGCTCCAGCAACTGTGATTTGTTGTGCTGATGAAGCAGCTTTGTGTGCTAAATGTGATGTTGAAGTTCATGCTGCAAACAGGCTAGCTAGCAAGCACCAGAGGCTTCTCCTTCAATGTCTTTCAAACAAGCTTCCCAGATGTGACATATGCCAGGATAAGGCAGCTTTCATATTTTGTGTTGAAGACAGAGCACTGTTCTGTAAGGATTGTGATGAACCAATTCATTCATCCGGAAGTCTTTCTTCAAACCACCAGCGCTTCCTTGCTACTGGTATCCGAGTGGCTTTGAGTTCTAAATGCACCAAAGCTAATGAAAAAAGTCACTCAGAACCTTCCAATTTGAGTGTACAACTAGCGAAAACTCCTCAGCAAGTGCCTAGCTTTACTTCCTCTTGGGCTGTTGATGACATTTTGGAATTAACAGATTTTGAATCACCAGGCAAAAAAGGATCCTTGGAGTTTGGAGAGCTTGAGTGGCTAGCAGATGAGGGTCTTTTCGGTGAACAATTTCCTCAGGAAGCTTTAGCTGCAGCCGAAGTTCCTCAGGTCCCATTTATGCATACTAGCAGTGTTACCTCATATAAAGCCTCTAAATCCTCTATGTCCTACAAAAAGCCTAGGCTTGAAGTCCTAGATGAAGATGACAATGAGCATTGCACTGTGCCTGATCTTGGCTAA 708 0.4336 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANRLASKHQRLLLQCLSNKLPRCDICQDKAAFIFCVEDRALFCKDCDEPIHSSGSLSSNHQRFLATGIRVALSSKCTKANEKSHSEPSNLSVQLAKTPQQVPSFTSSWAVDDILELTDFESPGKKGSLEFGELEWLADEGLFGEQFPQEALAAAEVPQVPFMHTSSVTSYKASKSSMSYKKPRLEVLDEDDNEHCTVPDLG 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0174 235 CDD Bbox1_BBX-like 57 98 - -
Lal2g0174 235 Pfam B-box zinc finger 52 95 IPR000315 GO:0008270
Lal2g0174 235 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Lal2g0174 235 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 235 - -
Lal2g0174 235 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lal2g0174 235 SMART bboxneu5 52 99 IPR000315 GO:0008270
Lal2g0174 235 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lal2g0174 235 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 235 - -
Lal2g0174 235 MobiDBLite consensus disorder prediction 207 235 - -
Lal2g0174 235 CDD Bbox1_BBX-like 5 47 - -
Lal2g0174 235 Gene3D Classic Zinc Finger 1 92 - -
Lal2g0174 235 MobiDBLite consensus disorder prediction 215 235 - -
Lal2g0174 235 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0174 Lal-Chr2 1038706 1045638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0174 1 158 Orphan Transcription Factor Family AT1G06040 63.095 3.54e-68 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Lal2g0174 zf-B_box 1.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0174 - - gmx:100779183 394.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0174 2 1038706 1045638 Lal9g0184 9 1144204 1149069 LSH
Lal25g0366 25 2483533 2485975 Lal2g0174 2 1038706 1045638 PCT
Lal8g0308 8 2067235 2069726 Lal2g0174 2 1038706 1045638 PCT
Lal2g0174 2 1038706 1045638 Lal25g0366 25 2483533 2485975 PCT
Lal2g0174 2 1038706 1045638 Lal8g0308 8 2067235 2069726 PCT