Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0139 ATGTTGCACTGTGTGAACACTACGGAGAATATAGGTGGAACATGTTCAGATATGACAGTGTTGGAAATTCAAAGAGCAAGGAGGAAGTGCCAACAAGAATACCAAGAAGAAGGGTTCTTTTGTGAAACTCAGTTTAACTCTCCTCATCGGGAAGATCTCATCATGATGATGGGTGATTCATTGCATGATGATGATGTGGTTGTTCATTCACTGAACCCTGACATGGGTTTGGAAAATGGATGGTTTAACATGGGATTCGGCTCTTCTATATTGCCACCTGCTAATGCCTTTGATGTCAATTCTTCTATTTCAAGGACTTGTAGCACAGACATGGCTTCACCAACGGAAATGAAAGAAGCCTTCAAGAAGAGGAAACCTCAAAAGCCTCACAATTCCAAGGTTGTAGCGGAAAGTGTTAACAAAGAGAAGAAGATCAAAGTTAGTGGTGATGAAGAGGAATCCAAGATGGCTGAGCAAACCAGTAAGAAGAATACAAAGGCAAATACAAGTAAGACCATCAAGGAAACTTGTGGCGAAAGTTCCAAGGAGAATTCAAAAGACTCTGAGGTTCAAAATCCAAAGCCTGATTACATTCATGTCCGGGCACGTCGTGGCCAAGCCACCGATAGTCATAGCTTAGCTGAAAGAGTTAGAAGGGAAAAAATTAGTGGGAGAATGAAGTATTTGCAAGATTTAGTACCAGGTTGCAACAAAATCACAGGAAAAGCTGGAATGCTTGATGAAATCATTAACTATGTTCAGTCCCTTCAACGACAAGTTGAGTTCTTGTCAATGAAATTAGCCGCTGTAAACCCAAGACTTGACTTCAACATTGATGATTTGTTTGCTAAAGAGGTATTCCCTGCTTGTTCTCCAAGATTTCCAAACATAGGGATGCAACCAGATATAACTACTAACCCTGCCCATCTTCAATTCAATCCAGCACAACCTGTTTCATGTTTTGGTGGATTAATAAACATGGGAATAAACCCTTCAGATGTGGCGCTTAGAAGGACCACAAAGGCACCTGTATCTTTACCTGAAATATTTATTGACTCATCATCCTGTTTCACACAAGTTTTACCTTCCTCAACTTGGGAAGTTGATTTCCAAAACCTTTACAATAATGTGACTTTTGATCAAGCACAAACAGCATCATCTCCTTCTCAACCATTTACAGGTAGCTACAAATTCATCACTTGTCAAATCACTTTTCCCTTGGCTTAA 1227 0.401 MLHCVNTTENIGGTCSDMTVLEIQRARRKCQQEYQEEGFFCETQFNSPHREDLIMMMGDSLHDDDVVVHSLNPDMGLENGWFNMGFGSSILPPANAFDVNSSISRTCSTDMASPTEMKEAFKKRKPQKPHNSKVVAESVNKEKKIKVSGDEEESKMAEQTSKKNTKANTSKTIKETCGESSKENSKDSEVQNPKPDYIHVRARRGQATDSHSLAERVRREKISGRMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNIDDLFAKEVFPACSPRFPNIGMQPDITTNPAHLQFNPAQPVSCFGGLINMGINPSDVALRRTTKAPVSLPEIFIDSSSCFTQVLPSSTWEVDFQNLYNNVTFDQAQTASSPSQPFTGSYKFITCQITFPLA 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0139 408 MobiDBLite consensus disorder prediction 135 160 - -
Lal2g0139 408 Gene3D - 203 277 IPR036638 GO:0046983
Lal2g0139 408 SMART finulus 212 262 IPR011598 GO:0046983
Lal2g0139 408 MobiDBLite consensus disorder prediction 161 175 - -
Lal2g0139 408 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 206 256 IPR011598 GO:0046983
Lal2g0139 408 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 204 275 IPR036638 GO:0046983
Lal2g0139 408 MobiDBLite consensus disorder prediction 107 195 - -
Lal2g0139 408 CDD bHLH_AtBPE_like 196 281 - -
Lal2g0139 408 Pfam Helix-loop-helix DNA-binding domain 210 257 IPR011598 GO:0046983
Lal2g0139 408 MobiDBLite consensus disorder prediction 176 195 - -
Lal2g0139 408 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 28 385 IPR024097 GO:0006355
Lal2g0139 408 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 28 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0139 Lal-Chr2 845031 847383 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0139 1 382 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G18300 38.539 2.68e-60 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal2g0139 HLH 9.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0139 - - gmx:100794256 418.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0222 1 1310638 1314022 Lal2g0139 2 845031 847383 LSH